View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_20 (Length: 241)
Name: NF3731_high_20
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 53435379 - 53435158
Alignment:
| Q |
20 |
gcgcatgcattaattccaccaaaacattttgatttttaatttcactttatattattattgatgaaaagaaagataaaattacaaactcaaccacggcaag |
119 |
Q |
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| T |
53435379 |
gcgcatgcattaattccaccaaaacattttgatttttaatttcactttatgttattattgatgaaaagaaagataaaattacaaactcaaccacggcaag |
53435280 |
T |
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| Q |
120 |
ctacggctctatacattataatcacctattaaaatgctcaaagaaagaaaaatatcaaaactgttgtgcccaatcaaagaaattaatggataaaataacg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53435279 |
ctacggctctatacattataatcacctattaaaatgctcaaagaaagaaaaatatcaaaactgttgtacccaatcaaagaaattaatggataaaataacg |
53435180 |
T |
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| Q |
220 |
ttaattagcttgtaaaattgcc |
241 |
Q |
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|||||||| ||||||||||||| |
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| T |
53435179 |
ttaattaggttgtaaaattgcc |
53435158 |
T |
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