View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3731_high_24 (Length: 227)
Name: NF3731_high_24
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 17651123 - 17650955
Alignment:
| Q |
40 |
ctgttaaacaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacactacccatgttggaaatgccagccagaaatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17651123 |
ctgttaaacaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacactacccatgttggaaatgccagccagaaatat |
17651024 |
T |
|
| Q |
140 |
taccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcat |
208 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17651023 |
tagcagcttgacataaagcatccctccatttttgcaccttatccttatcatcactaaacctctcctcat |
17650955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 208
Target Start/End: Complemental strand, 17699152 - 17698989
Alignment:
| Q |
47 |
acaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaaca--ctacccatgttggaaatgccagccagaaatattacca |
144 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| || |
|
|
| T |
17699152 |
acaaacaaaagcatggtaattaaaataaatgcataaaagtatggtatgagattataaaataatctacccatgttggaaatgccagccagaaacattagca |
17699053 |
T |
|
| Q |
145 |
gcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcat |
208 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
17699052 |
gcttgacataaagaatccctccatttttgcaccttatccttatcatcactaaacctctcttcat |
17698989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 17661317 - 17661160
Alignment:
| Q |
53 |
aaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacact--acccatgttggaaatgccagccagaaatattaccagcttga |
150 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
17661317 |
aaaagaaccgtaattaaaataaataaataaaagtatggtatgagattagaaaatactgtacccatgttggaaatgccagccagaaacattagcagcttga |
17661218 |
T |
|
| Q |
151 |
cataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17661217 |
cataaagcatctctccatttttgcaccttatccttatcatcacaaaacctcttctcat |
17661160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 17642431 - 17642291
Alignment:
| Q |
68 |
aaaataaatgcataaaagtatggtatgagattataaaacact--acccatgttggaaatgccagccagaaatattaccagcttgacataaagcatctctc |
165 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
17642431 |
aaaataaatgcataa--gtatggtatgagattataaaatactgtacccatgttggaaatgccagccagaaacattagcagcttgacataaagcatccctc |
17642334 |
T |
|
| Q |
166 |
catttttgcaccttatccttatcatcacaaaacctctcctcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17642333 |
catttttgcaccttatccttatcatcactaaacctctcctcat |
17642291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 17617495 - 17617341
Alignment:
| Q |
53 |
aaaagaagggtaatcaaaataaatgcataaaagtatggtatgagat-tataaaacactacccatgttggaaatgccagccagaaatattaccagcttgac |
151 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
17617495 |
aaaagaaccgtaattaaaataaataaataaaagtatggtatgagatatataatactgtacccatgttggaaatgccagccagaaacattagcagcttgac |
17617396 |
T |
|
| Q |
152 |
ataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctc |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17617395 |
ataaagcatccctccatttttgcaccttatccttatcatcacaaaacctttcctc |
17617341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 17712359 - 17712221
Alignment:
| Q |
47 |
acaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattat-aaaacact--acccatgttggaaatgccagccagaaatattacc |
143 |
Q |
| |
|
|||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||| ||||||||||| |||| | |
|
|
| T |
17712359 |
acaagcaaaggaacggtaattaaaataaatgcataaaagtatggtatgagattattaaaatactgtacccgtgttggaaatcccagccagaaacattagc |
17712260 |
T |
|
| Q |
144 |
agcttgacataaagcatctctccatttttgcaccttatc |
182 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17712259 |
agcttgacataaagcatccctccatttttgcaccttatc |
17712221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 5924580 - 5924666
Alignment:
| Q |
120 |
gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctc |
206 |
Q |
| |
|
||||||||| ||||| |||||| |||||||| |||||||||||||||||| |||| ||||| ||| ||||| | |||||||||||| |
|
|
| T |
5924580 |
gaaatgccatccagacatattagcagcttgatgtaaagcatctctccatttctgcatcttatgcttgtcatctccaaacctctcctc |
5924666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 5918255 - 5918317
Alignment:
| Q |
120 |
gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatc |
182 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
5918255 |
gaaatgccatccagacatattagcagcttgacgtaaagcatccctccatttctgcaccttatc |
5918317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 5906031 - 5906115
Alignment:
| Q |
116 |
gttggaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacct |
200 |
Q |
| |
|
||||||||||||| ||||| | | || ||||||| | ||||| || |||||||| |||||||||||||| ||||| | |||||| |
|
|
| T |
5906031 |
gttggaaatgccatccagagagactagcagcttgccgcaaagcgtccctccatttctgcaccttatccttctcatctctaaacct |
5906115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University