View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_3 (Length: 500)
Name: NF3731_high_3
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 2 - 500
Target Start/End: Original strand, 48486314 - 48486814
Alignment:
| Q |
2 |
catcatttaaactcttgtgtttcattcagtggtcataggtgattaattt--gttatatatttcaattcatgagtcatgttcaaacatgatttatgacatc |
99 |
Q |
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| T |
48486314 |
catcatttaaactcttatgtttcattcagtggtcataggtgattaatttttgttatatatttcaattcatgagtcatgctcaaacatgatttatgacatc |
48486413 |
T |
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| Q |
100 |
aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat |
199 |
Q |
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| T |
48486414 |
aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat |
48486513 |
T |
|
| Q |
200 |
gtcatctaaattacaagttcacacacaattagatctctatattgtatgctaaacttaactaatagattcacagcatcatcagtcatgaatcatgatcata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48486514 |
gtcatctaaattacaagttcacacacaattagatctctatattttatgctaaacttaacttatagattcacagcatcatcagtcatgaatcatgatcata |
48486613 |
T |
|
| Q |
300 |
cacaacacgaagtggaaaaattaaaatcacctggccttggcagtgatattcctgttcagcacaggaagtcgcaccctccacaatttgcttagctctataa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48486614 |
cacaacacgaagtggaaaaattaaaatcacctggccttggcagtgatattcctgttcagcacaggaagtcgcaccctccacaatttgcttagctctataa |
48486713 |
T |
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| Q |
400 |
tgtggatccagaatgccattatctgccaacattgcctcctccattgcctcgtgaaagtcacttcctttggtcttgtacaatcgggtctgcccctggaatc |
499 |
Q |
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| T |
48486714 |
tgtggatccagaatgccattatctgccaacattgcctcctccattgcctcgtgaaagtcacttcctttggtcttgtacaatcgggtctgcccctggaatc |
48486813 |
T |
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| Q |
500 |
t |
500 |
Q |
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| T |
48486814 |
t |
48486814 |
T |
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