View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_4 (Length: 480)
Name: NF3731_high_4
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 53434502 - 53434958
Alignment:
| Q |
13 |
cataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatttgattttcattctttgatttagtagctaagta |
112 |
Q |
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| T |
53434502 |
cataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatttgattttcattctttgatttattagctaagta |
53434601 |
T |
|
| Q |
113 |
tgaccttgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttcctttcatgtttataattaagtactcttgaattgaa |
212 |
Q |
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| T |
53434602 |
tgaccttgactctccaagaagaaggaagagtgagtaaaacactaatatcaataaaattggatttcctttcatgtttataattaagtactcttgaattgaa |
53434701 |
T |
|
| Q |
213 |
cttagttagttttgatagtatgatttaattagttgatgagtatgcttattagctccccctcgcacacatttatataagaagccacggactagttaaagta |
312 |
Q |
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| T |
53434702 |
cttagttagttttgatagtatgatttaattagttgatgagtatgcttattagctccccctcgcacacatttatataagaagccacggactagttaaagta |
53434801 |
T |
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| Q |
313 |
aataagtttaatcagtgctttattgtgtcagcattggtttatatgatttatggtaacatagtattttcagaaagttatatcatcataaaggcatac---- |
408 |
Q |
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| T |
53434802 |
aataagtttaatcagtgctttattgtgtcagcattggtttatatgatttatggtaacatagta-tttcagaaagttatatcatcataaaggcatactaat |
53434900 |
T |
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| Q |
409 |
--taatatgtcatcgcttagcgatatcattttacacttgggtttaatcatattttatc |
464 |
Q |
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| T |
53434901 |
agtaatatgtcatcgcttagcgatatcattttacacttgggtttaatcatattttatc |
53434958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 53426346 - 53426518
Alignment:
| Q |
17 |
ggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatttgattttcattctttgatttagtagctaagtatgac |
116 |
Q |
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||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||| |||||| ||||||| ||||| || || |||| |||| |
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| T |
53426346 |
ggcatgatcttcgcgaagggaaccattagttgaatgtgaagctcccatatacacaatataaacttgattgtcattctctgattgaggagttaaggatgat |
53426445 |
T |
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| Q |
117 |
cttgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttcctttcatgttta |
189 |
Q |
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| T |
53426446 |
cttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctttcatgttta |
53426518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 26099437 - 26099604
Alignment:
| Q |
19 |
catgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatttgattttcattctttgatttagtagctaagtatgacct |
118 |
Q |
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| T |
26099437 |
catgatctttacgaagggaaccattagttgaatccacacctcccatgtacacaatataaacttgattttcattctttggttgagtagctaaagatgattt |
26099536 |
T |
|
| Q |
119 |
tgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttcctttcatgttta |
189 |
Q |
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| T |
26099537 |
taactctcc---aagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgttta |
26099604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 48370576 - 48370508
Alignment:
| Q |
251 |
agtatgcttattagctccccctcgcacacatttatataagaagcca-cggactagttaaagtaaataag |
318 |
Q |
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| T |
48370576 |
agtatgcttgttagctcccgccctcacacatttatataaaaagccattggactagttaaagtaaataag |
48370508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 26099615 - 26099686
Alignment:
| Q |
247 |
gatgagtatgcttattagctccccctcgcacacatttatataagaagcca-cggactagttaaagtaaataa |
317 |
Q |
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||||||||||||| ||||||||| | | |||| ||||||||||||||||| |||| | ||||||||||||| |
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| T |
26099615 |
gatgagtatgcttgttagctcccacgctcacaaatttatataagaagccattggacgaattaaagtaaataa |
26099686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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