View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_high_8 (Length: 364)
Name: NF3731_high_8
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_high_8 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 24884842 - 24884504
Alignment:
| Q |
18 |
aacttgtcttatcataacatattgggatcaagttggcctcaaacgtataaattaaaaacggaaaccttattagaaatacaacttattaatttgtttctgc |
117 |
Q |
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| T |
24884842 |
aacttgtcttatcataacatattgggatcaagttggtatcaaacgtataaattaaaaacggaaaccttattagaaatacaacttattaatttgtttctgc |
24884743 |
T |
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| Q |
118 |
atttcctattgacaaataaaattctaatgatgtgtccttcctttttgttgtttacatccttttctgtctcaacatgttgagaatttagttgggagtcagg |
217 |
Q |
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| T |
24884742 |
atttcctattgacaaataaaattctaatgatgtgtccttcctttttgttgtttacatccttttctgtctcaacatgttgagaatttagttgggagtcagg |
24884643 |
T |
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| Q |
218 |
atatacatcttacaagcatgtgaatctaattcagcagatatatctcccgacacttttgattgtgttgaatgctgcaaagttcatcataaatagtcaaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884642 |
atatacatcttacaagcatgtgaatctaattcagcagatatatctcccgacacttttgattgtgttgaatgctgcaaagttcatcataaatagtcaaaaa |
24884543 |
T |
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| Q |
318 |
cacaacattataggtatctttatcctttaactctctgct |
356 |
Q |
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| T |
24884542 |
cacaacattataggtatctttatcctttaactctctgct |
24884504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 32599771 - 32599846
Alignment:
| Q |
220 |
atacatcttacaagcatgtgaatctaattcagcagatatatctcccgacacttttgattgtgttgaatgctgcaaa |
295 |
Q |
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| T |
32599771 |
atacatcttacaggcatgtgaatctaactcagcagagatttcacccgaaaccattgattgtgttgagtgctgcaaa |
32599846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 34577071 - 34577118
Alignment:
| Q |
220 |
atacatcttacaagcatgtgaatctaattcagcagatatatctcccga |
267 |
Q |
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| T |
34577071 |
atacattttacaagcatgtgaatctaaatcagcagatatttctcccga |
34577118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 78899 - 78931
Alignment:
| Q |
102 |
attaatttgtttctgcatttcctattgacaaat |
134 |
Q |
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| T |
78899 |
attaatttgtttctacatttcctattgacaaat |
78931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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