View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_low_1 (Length: 686)
Name: NF3731_low_1
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_1 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 114 - 518
Target Start/End: Original strand, 28717746 - 28718151
Alignment:
| Q |
114 |
agtgaagccaatgatgccnnnnnnnttggaatttccgtcttaaataactatgatgtaaatttcttggctgtggtaacgaggcttcaaattactagtttat |
213 |
Q |
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| T |
28717746 |
agtgaagccaatgatgccaaaaaaattggaatttccgtcttaaataactatgatgtaaatttcttggctgtggtaacgaggcttcaaattactagtttat |
28717845 |
T |
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| Q |
214 |
tttgnnnnnnnnccactcattttttaaaaatacaaagtcagacttgcatgtatgatttcatta-aattattattattaaatgtaataatcggaatttcaa |
312 |
Q |
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| T |
28717846 |
tttgttttttttccactcatttttttaaaatacaaagtcagacttgcatgtatgatttcattataataattattattgaatgtaataatcggaatttcaa |
28717945 |
T |
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| Q |
313 |
attctaggataggattgataaaactttggccttgtttggagtttgaattggtagtaatagggagtgctacgaggttaatgcaagaggaaactttttactg |
412 |
Q |
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| T |
28717946 |
tgtctagtataggattgataaaactttggccttgtttggagtttgaattggtagtaatagggagtgctatgaggttaatggaagaggaaactttttactg |
28718045 |
T |
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| Q |
413 |
ttattgaggattttaagcaaattttcaaatgcttctcatctctttataatactgaaaccaaaaatcagtcattctttagaaatgttcttctaattaaggc |
512 |
Q |
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| T |
28718046 |
ttattgaggattttaagcaaattttcaaatgcttctcatctctttataatagtgaaaccaaaaatcagtcattctttagaaatgttcttctaattaaggc |
28718145 |
T |
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| Q |
513 |
aaaaaa |
518 |
Q |
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| T |
28718146 |
aaaaaa |
28718151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 530 - 668
Target Start/End: Original strand, 28718339 - 28718477
Alignment:
| Q |
530 |
aacattgctatctttcaatatttatctgaaagagtacatatgtagtggagtggtgcaacttctaattggcaaacactgattgtgtagcaatggtaaaagt |
629 |
Q |
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| T |
28718339 |
aacattgctatctttcaatatttatctgaaagagtacaaatgtagtggagtggtgcaacttctaattggcaaaaactgattgtgtagcaatggtaaaagt |
28718438 |
T |
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| Q |
630 |
aatgaatgttactgcaagtaagacactggaagctgatat |
668 |
Q |
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| T |
28718439 |
aatgaatgtaactgcaagtaagacactggaagctgatat |
28718477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 28682794 - 28682834
Alignment:
| Q |
164 |
tgatgtaaatttcttggctgtggtaacgaggcttcaaatta |
204 |
Q |
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| T |
28682794 |
tgatgtaaatttcttggctgtggtactgaggcttcaaatta |
28682834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 650
Target Start/End: Original strand, 153816 - 153894
Alignment:
| Q |
573 |
agtggagtggtgcaacttctaattggcaaacactgattgtgtagcaat-ggtaaaagtaatgaatgttactgcaagtaa |
650 |
Q |
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| T |
153816 |
agtggagtggtgcaacatctaattggccaaaattgattgtgcatcaatgggtaatggtaatgaatgatactgcaagtaa |
153894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 38262921 - 38262971
Alignment:
| Q |
156 |
aataactatgatgtaaatttcttggctgtggtaacgaggcttcaaattact |
206 |
Q |
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| T |
38262921 |
aataactttgatgtaaatttcttggctgtggtactgaggcttcacattact |
38262971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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