View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3731_low_10 (Length: 333)
Name: NF3731_low_10
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 41390184 - 41390503
Alignment:
| Q |
1 |
gtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgatagaaattctaaaagtttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390184 |
gtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgatagaaattctaaaagtttat |
41390283 |
T |
|
| Q |
101 |
tgcaatatgatatactatattgcaacaatacctaaacgaacaaattcattagtataacaagtgtacttaatcgttacaagtaataattcgtagattgggg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41390284 |
tgcaatatgatatactatatcgcaacaatacctaaacgaacaaattcattagtataacaagtgtaattaatcgttacaagtaataattcgtagattgggg |
41390383 |
T |
|
| Q |
201 |
gtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaactatatataataggtcctttggaagaagaggaaatgctgggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390384 |
gtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaactatatataataggtcctttggaagaagaggaaatgctgggaa |
41390483 |
T |
|
| Q |
301 |
ggatcgcggtggtggaagtt |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41390484 |
ggatcgcggtggtggaagtt |
41390503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 45518849 - 45518885
Alignment:
| Q |
49 |
aattaagagaatgattgattatttgaaattgatagaa |
85 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
45518849 |
aattgagagaaagattgattatttgaaattgatagaa |
45518885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University