View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_low_11 (Length: 330)
Name: NF3731_low_11
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 22560684 - 22560988
Alignment:
| Q |
6 |
agcagcacagaaagaataataatcatcataaaggaaaaccaatcaatatttcaagatgctaatcaaatccactagggataaaacttttgttttgattttg |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22560684 |
agcatcacaaaaagaataataatcatcataaaggaaaaccaatcaatatttcaagatgctaatcaaatccactagggataaaacttttgttttgattttg |
22560783 |
T |
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| Q |
106 |
agtggaaaattcacaatcattgaaagagaatgatttnnnnnnnnnnnnnncttatacatcaatgcccttttgttgaaagagaacaaaaacaaatatgaga |
205 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22560784 |
agtggaaaattcacaatcattgaaagagaatgaatt---aaaaaaaaaaacttatacatcaatgcccttttgttgaaagaggacaaaaacaaatatgaga |
22560880 |
T |
|
| Q |
206 |
gagtttaaaagcttctttcaattattataacttagcaacgnnnnnnnnnnnnnnnnnnnnntggaccctttaaatcattaaggaaataatgacgcaaagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22560881 |
gagtttaaaagcttctttcaattattataacttagcaacgaaaagaaaataaaaataaaaatggaccctttaaatcattaaggaaataatgacgcaaagc |
22560980 |
T |
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| Q |
306 |
catacccc |
313 |
Q |
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|||||||| |
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| T |
22560981 |
catacccc |
22560988 |
T |
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