View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_low_19 (Length: 244)
Name: NF3731_low_19
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22612262 - 22612026
Alignment:
| Q |
1 |
ttggtctcacaaatatgtcattttcatgattgccaaattcaatttcctccacaagtatatattgttttcattcatttaaaaatcttttatttaataattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22612262 |
ttggtctcacaaatatgtcattttcatgattgccaaattcaatttcctccacaagtatatattgttttcattcatttaaaaatcttctatttaataattg |
22612163 |
T |
|
| Q |
101 |
tcagtatgaaatttaggtgtgattcttatcatat--atatcaacgtgttccttccttctctatttgcaatatagtggtaggtatagtgtagagatttcta |
198 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22612162 |
tcagtatgaaatttaggtgtgattcttatcatatatatatcaacgtgttccttccttctctatttgcaatatagtggtaggtatagtgtagagatttcta |
22612063 |
T |
|
| Q |
199 |
cgtgggttggttgcatagtttatggagaaggataatc |
235 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
22612062 |
cgtgggttggttgcatagtttatggagaatgataatc |
22612026 |
T |
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