View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_low_2 (Length: 569)
Name: NF3731_low_2
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Original strand, 11932660 - 11933207
Alignment:
| Q |
9 |
agcagagatgagatcaaagagcacgggatgatcaagctggacgaattcagcgtcccatgtcttaaggtcctgctctgaaggtttttcatcagaattcaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
11932660 |
agcagagatgagatcaaagagcacgggatgatcaagctggacgaattcagcgtcccacgtcttaaggtcatgctctgaagatttttcatcagaattcaca |
11932759 |
T |
|
| Q |
109 |
gcattaacgtgcttcttgcaatactcaataaccaaagccaagatcttaccacttaccacatggatagggattcgattgttgtcaacaacgtcctcgatca |
208 |
Q |
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|||||||| |||||||| |||||||||| || |||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
11932760 |
gcattaacatgcttcttacaatactcaacaattaaagccaagatcttgccggttaccttagggatagggattcgattgttgtcaacaacgtcctcgatca |
11932859 |
T |
|
| Q |
209 |
aattcttgatggttttaaattccatcgccactgtcttctcgatttcaatgatctcgccctcagaacttgtcagggtgatcttctttgtcgatgattcaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11932860 |
aattcttgatggttttaaattccatcgccactgtcttctcgatttcaaagatctcgccatcagaacttgtcagggtgatcttctttgtcgatgattcaac |
11932959 |
T |
|
| Q |
309 |
acgatcagacatgattttgatttggatataaaccctaaccctaaatttatttctaggtttgaaaatagagtgagtgaattgaattgaatgagagaaagaa |
408 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
11932960 |
acgatcagacatgatctcgatttggatataaaccctaaccctaaatttatttctaggttagaaaatagagtgagtgaattgaattgaattagtgaaagaa |
11933059 |
T |
|
| Q |
409 |
taggtgttacgact----attattatgctttgctacaatgcaattaaagtctccgtca-cttttttctttcaagtagctagtggaaattgggaatccaag |
503 |
Q |
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| T |
11933060 |
taggcgttgcggctggtatttattatgctttgctacaatgcaattaaggtctccacaagtttttttctttaaagtaggtaatagaaattgggaatccaag |
11933159 |
T |
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| Q |
504 |
atccgaacccggcccatacaaataatgtctcgtcttcgtagatatcaa |
551 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11933160 |
atccgaacccgacccatacaaataatgtctcgtcttcgtagatatcaa |
11933207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Original strand, 11929010 - 11929559
Alignment:
| Q |
9 |
agcagagatgagatcaaagagcacgggatgatcaagctggacgaattcagcgtcccatgtcttaaggtcctgctctgaaggtttttcatcagaattcaca |
108 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||| | |
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| T |
11929010 |
agcagagatgagatcaaagagcacaggctgatcaagctggacgaattcagcgtcccacatcttaagagcatgctttgaaggtttttcatcagaattcata |
11929109 |
T |
|
| Q |
109 |
gcattaacgtgcttcttgcaatactcaataaccaaagccaagatcttaccacttaccacatggatagggattcgattgttgtcaacaacgtcctcgatca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||| |||||||| ||| ||||||||||| |
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| T |
11929110 |
gcattaacgtgcttcttgcaatactcaataaccaaagccaagatttcacctcttaccttgtagatagggattcgagtgttgtcatcaaggtcctcgatca |
11929209 |
T |
|
| Q |
209 |
aattcttgatggttttaaattccatcgccactgtcttctcgatttcaatgatctcgccctcagaacttgtcagggtgatcttctttgtcgatgattcaac |
308 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
11929210 |
aattcttgatggttttagattccatcgccacttccttctcgatttcaaagatctcgccgtcagaacttgtcaaggtgatcttctttgttgatgattcaac |
11929309 |
T |
|
| Q |
309 |
acgatcagacatgattttgatttggatataaaccctaaccctaaatttatttctaggtttgaaaatagagtgagtgaattgaattgaatgagagaaagaa |
408 |
Q |
| |
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| ||||||||||||||| || |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11929310 |
atgatcagacatgatttcgaattggatctaaaccttaacactaaatttatttctaggtttgaaaatagagtgagtgaattgaattgaatgagagaaagaa |
11929409 |
T |
|
| Q |
409 |
taggtgttacgacta--------ttattatgctttgctacaatgcaattaaagtctccgtcacttttttctttcaagtagctagtggaaattgggaatcc |
500 |
Q |
| |
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|||| ||||| |||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||| | |
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| T |
11929410 |
taggagttacaactagtatttatttattatgctttgctacaatgcaa-taaagtctccacaagttttttctttcaagtagctagtggaaattggcaattc |
11929508 |
T |
|
| Q |
501 |
aagatccgaacccggcccatacaaataatgtctcgtcttcgtagatatcaa |
551 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
11929509 |
aagatccgaacccggcccatacaaataatgtctcgtcattgtagatatcaa |
11929559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 11160499 - 11160451
Alignment:
| Q |
298 |
gatgattcaacacgatcagacatgattttgatttggatataaaccctaa |
346 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
11160499 |
gatgattcaacaccgtcagacatgattttgatttggataaaaaccctaa |
11160451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 11166276 - 11166338
Alignment:
| Q |
93 |
ttcatcagaattcacagcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
155 |
Q |
| |
|
|||||||||| | |||||| ||| || |||||||||||||||||||||| |||||||||||| |
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| T |
11166276 |
ttcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatctt |
11166338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 11179291 - 11179361
Alignment:
| Q |
94 |
tcatcagaattcacagcattaacgtgcttcttgcaatactcaataaccaaagccaagatcttaccacttac |
164 |
Q |
| |
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||||||||| | |||||| ||| || |||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
11179291 |
tcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccagttac |
11179361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 11189953 - 11190014
Alignment:
| Q |
94 |
tcatcagaattcacagcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
155 |
Q |
| |
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||||||||| | ||||||| ||| || |||||||||||||||||||||| ||||||||||| |
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| T |
11189953 |
tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatctt |
11190014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 11197748 - 11197795
Alignment:
| Q |
108 |
agcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
155 |
Q |
| |
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||||||||| || ||||||||||||||||||| || |||||||||||| |
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| T |
11197748 |
agcattaacatgtttcttgcaatactcaataaacatagccaagatctt |
11197795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 11160688 - 11160651
Alignment:
| Q |
118 |
tgcttcttgcaatactcaataaccaaagccaagatctt |
155 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||| |
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| T |
11160688 |
tgcttcttgcaatgctcaataaccatagccaagatctt |
11160651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 6948188 - 6948248
Alignment:
| Q |
91 |
ttttcatcagaattcacagcattaacgtgcttcttgcaatactcaataaccaaagccaaga |
151 |
Q |
| |
|
|||||||||||| | |||| | ||| |||||||||||||||||||||||| |||||||| |
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|
| T |
6948188 |
ttttcatcagaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga |
6948248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 11182247 - 11182187
Alignment:
| Q |
37 |
tgatcaagctggacgaattcagcgtcccatgtcttaaggtcctgctctgaaggtttttcat |
97 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||| || | ||||| |||||||||| |
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|
| T |
11182247 |
tgatcaacctggacgaattcagcgtcccacttcttaagttcatcctctggtggtttttcat |
11182187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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