View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3731_low_6 (Length: 423)
Name: NF3731_low_6
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 111 - 406
Target Start/End: Complemental strand, 29204884 - 29204589
Alignment:
| Q |
111 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204884 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
29204785 |
T |
|
| Q |
211 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204784 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
29204685 |
T |
|
| Q |
311 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204684 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaat |
29204589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 111 - 406
Target Start/End: Original strand, 12646992 - 12647287
Alignment:
| Q |
111 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12646992 |
gccaatatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
12647091 |
T |
|
| Q |
211 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12647092 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
12647191 |
T |
|
| Q |
311 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12647192 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaaggatttcgaacagatataagaatgtctcgctcagccaaaat |
12647287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University