View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3731_low_7 (Length: 418)
Name: NF3731_low_7
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3731_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 408
Target Start/End: Original strand, 30071248 - 30071637
Alignment:
| Q |
21 |
tgctacaattgagataatgataggagagtgaaaaaagtaaccattgcaatctcggatatgtccacaacaagttgtacttctcgagttggagaagaaagaa |
120 |
Q |
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| T |
30071248 |
tgctacaattgagataatgataggagggtgaaaaaagtaaccattgcaatctcggatatggccacaacaagttgtacttctcgagtaggagaagaaagaa |
30071347 |
T |
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| Q |
121 |
tcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatggatttaaaccttattttataatatcatggtat |
220 |
Q |
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| T |
30071348 |
tcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatggatttaaaccttattttataatatcatggtat |
30071447 |
T |
|
| Q |
221 |
tcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacatttggaccaatccattgtacacgcagcacaaatgcat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30071448 |
tcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacacttggaccaatccattgtacacgcagcacaaatgcat |
30071547 |
T |
|
| Q |
321 |
gcaggaatttc--tctctcttctctgacctgcttctactttcttccctatcattccatcaccgccacctcccccctctccatggtctgtg |
408 |
Q |
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| T |
30071548 |
gcaggaatttctttctctcttctctgacccgcttctactttcttccctatcattccatcaccgccacctcccccctctccatggtctgtg |
30071637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 30052599 - 30052808
Alignment:
| Q |
21 |
tgctacaattgagataatgataggagagtgaaaaaagtaaccattgcaatctcggatatgtccacaacaagttgtacttctcgagttggagaagaaagaa |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||| |
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| T |
30052599 |
tgctacaattgagataatgataggagagtgaaataaggaaccattgcaatctcggatttggccaccacaagttgtacttctcaagttggagaagaaagaa |
30052698 |
T |
|
| Q |
121 |
tcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatggatttaaaccttattttataatatcatggtat |
220 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30052699 |
tcatgttcatttaatttgaaacatcctataggaagtgaatttcaggctacataaatgaaggtagcatggatttaaaccttattttataatatcatggtat |
30052798 |
T |
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| Q |
221 |
tcttctgaaa |
230 |
Q |
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|||||||||| |
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| T |
30052799 |
tcttctgaaa |
30052808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 30076682 - 30076958
Alignment:
| Q |
21 |
tgctacaattgagataatgataggagagtgaaaaaagtaaccattgcaatctcggatatgtccacaacaagttgtacttctcgagttggagaagaaagaa |
120 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||| || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
30076682 |
tgcttcaattgagataatgataggagattgaaataagggacaattgcaatctcggatatggccaccacaagttgtacttctcgagttggagaagaaagaa |
30076781 |
T |
|
| Q |
121 |
tcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatggatttaaaccttattttataatatcatggtat |
220 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||| |||| | |||||||||| ||| ||||||| |||||||||| |||| |||||| | | |
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| T |
30076782 |
tcatgttcattttctttgaaagattcaataggaagtgaattcaatgctacataaataaagatagtttggattttaaccttatttaataaaatcatgatgt |
30076881 |
T |
|
| Q |
221 |
tcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacatttggaccaatccat |
298 |
Q |
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|||||||||||| |||||| ||||||||| | | |||| |||||||||||| ||| |||| || | | |||||||||| |
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| T |
30076882 |
tcttctgaaaaa-tgggtgattttggaaactgtatttctaaatttgatagaagttccttaccactagaaccaatccat |
30076958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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