View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3731_low_9 (Length: 362)

Name: NF3731_low_9
Description: NF3731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3731_low_9
NF3731_low_9
[»] chr8 (3 HSPs)
chr8 (51-360)||(13767981-13768291)
chr8 (67-137)||(8037877-8037944)
chr8 (67-127)||(44359164-44359224)
[»] chr5 (2 HSPs)
chr5 (51-342)||(17902057-17902351)
chr5 (176-287)||(18928607-18928718)
[»] chr1 (5 HSPs)
chr1 (163-360)||(11663981-11664178)
chr1 (51-295)||(38510542-38510785)
chr1 (52-136)||(11664211-11664295)
chr1 (100-136)||(11664176-11664212)
chr1 (74-137)||(6813385-6813448)
[»] chr4 (4 HSPs)
chr4 (51-226)||(35913445-35913619)
chr4 (53-317)||(45355240-45355499)
chr4 (53-317)||(45368981-45369240)
chr4 (251-360)||(35913618-35913726)
[»] scaffold0063 (1 HSPs)
scaffold0063 (51-159)||(50134-50242)
[»] chr3 (1 HSPs)
chr3 (74-142)||(24565366-24565434)
[»] scaffold0009 (1 HSPs)
scaffold0009 (74-137)||(18807-18870)
[»] chr7 (2 HSPs)
chr7 (74-137)||(36366875-36366938)
chr7 (80-142)||(46194027-46194089)
[»] chr6 (1 HSPs)
chr6 (82-128)||(7968407-7968453)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 51 - 360
Target Start/End: Complemental strand, 13768291 - 13767981
Alignment:
Q  51 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||   || |||||| ||| ||||||    
T  13768291 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtagagatgcataaaacaataattcagggaatga 13768192  T
Q  151 attattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgt 250  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||    
T  13768191 attattcc-gataattttcttttacattatactgcattgtttttattcccaacaaaaa-ggtgggttttatttattcccggcggttaacatcctctctgt 13768094  T
Q  251 tttgaaagatcatttctaccctcctaaataa---ccgcaatatacccacattttttggttacatatccacatttatacaccaatttatgtgccactcaga 347  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13768093 tttgaaagaccatttctaccctcctaaataaccgccgcaatatacccacgttttttggttacatatccacgtttatacaccaatttatgtgccactcaga 13767994  T
Q  348 cttttttcttctc 360  Q
     ||||||||||||    
T  13767993 attttttcttctc 13767981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 8037877 - 8037944
Alignment:
Q  67 aaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaata 137  Q
    ||||| ||||||||||||| ||||||||||   |||||||||||| ||||| | |||||||| ||||||||    
T  8037877 aaatttaattcccaggaatttaagatggga---atttattcccatgtttggcagacatgcacacaaaaata 8037944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 44359164 - 44359224
Alignment:
Q  67 aaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgca 127  Q
    ||||| ||||||||| ||| || ||||||||| |||||||||||| ||||||| |||||||    
T  44359164 aaatttaattcccagaaatttaggatgggaatgatttattcccatgtttggtagacatgca 44359224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 342
Target Start/End: Complemental strand, 17902351 - 17902057
Alignment:
Q  51 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatga 150  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||| ||||| ||||||    
T  17902351 tttggttcatggttacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatga 17902252  T
Q  151 attattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgt 250  Q
    |||||||| || || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  17902251 attattcccggcaacttt-ttttacactatactgcattgtttttattcccagcaaaaagggtgggttttatttattcccggcggttaacatcctttgtgt 17902153  T
Q  251 tttgaaagatcatttctaccctcctaaataaccgcaatatacccacattt--tttggttacatatcc---acatttatacaccaatttatgtgccac 342  Q
    ||||||||| | ||| ||||||||||||||||||| | |||||||| |||  |||||||||||||||   |  |||||| |||||||||||||||||    
T  17902152 tttgaaagaccgtttttaccctcctaaataaccgc-agatacccacgttttctttggttacatatccattatgtttatataccaatttatgtgccac 17902057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 18928718 - 18928607
Alignment:
Q  176 actatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgttttgaaagatcatttctaccctcct 275  Q
    |||||| ||| || |||||||||||| ||||||   |||||||||||||||| | || |||||||| || |||||||||||||| | ||| |||||||||    
T  18928718 actatattgccttatttttattcccagcaaaaattatgggttttatttattcccagcagttaacatactttgtgttttgaaagaccctttataccctcct 18928619  T
Q  276 aaataaccgcaa 287  Q
    || |||| ||||    
T  18928618 aagtaactgcaa 18928607  T

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Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 163 - 360
Target Start/End: Complemental strand, 11664178 - 11663981
Alignment:
Q  163 aattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgttttgaaagatca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||    
T  11664178 aattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattcccggcagttaacatcctctgtgttttgaaagacca 11664079  T
Q  263 tttctaccctcctaaataaccgcaatatacccacattttttggttacatatccacatttatacaccaatttatgtgccactcagacttttttcttctc 360  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  11664078 tttctaccctcataaataaccgcaatatacccacgttttttggttacatatccacgtttatacaccaatttatgtgccactcagaattttttcttctc 11663981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 51 - 295
Target Start/End: Original strand, 38510542 - 38510785
Alignment:
Q  51 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatga 150  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||| | |||||||||||| ||||||| |||||||| |||||||| | |||  |||||    
T  38510542 tttggttcatggttacaaattgaattcttaggaatctaagatgggagttatttattcccatgtttggtagacatgcacacaaaaatatttcaggaaatga 38510641  T
Q  151 attattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgt 250  Q
    |||||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |    
T  38510642 attattcccggcaatgtt-ttttacactatattgcattgtttttattcccaacaaaaagggtgggttttatttattcccggcggttaacatcctttatat 38510740  T
Q  251 tttgaaagatcatttctaccctcctaaataaccgcaatataccca 295  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  38510741 tttgaaagaccatttttaccctcctaaataaccgcagtataccca 38510785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 11664295 - 11664211
Alignment:
Q  52 ttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaat 136  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11664295 ttgtttcatggttacaaattgaattctcagaaatctaagatgggaatcatttattcccatatttgatagacatgcacccaaaaat 11664211  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 11664212 - 11664176
Alignment:
Q  100 atttattcccatatttggtaaacatgcacccaaaaat 136  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11664212 atttattcccatatttggtagacatgcacccaaaaat 11664176  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 6813448 - 6813385
Alignment:
Q  74 attcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaata 137  Q
    ||||| |||||||||||||| |||| ||||||||| || ||||||| |||||||  ||||||||    
T  6813448 attcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaata 6813385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 35913445 - 35913619
Alignment:
Q  51 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatga 150  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  35913445 tttgtttcatggttacaaattgaattcccagaaatctaagatgggaatcatttattcccatgtttggtagacatgcacccaaaaataatccag-gaatga 35913543  T
Q  151 attattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttatt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35913544 attattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttatt 35913619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 317
Target Start/End: Original strand, 45355240 - 45355499
Alignment:
Q  53 tgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatgaat 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||| ||||  ||||||||    
T  45355240 tgtttcatggttacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaat 45355339  T
Q  153 tattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgttt 252  Q
    ||||||  | ||| || ||||||||||||||||||||||||    | || ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  45355340 tattcccagcaatatt-ttttacactatactgcattgtttt----ctcagcaaaaagggtgggttttatttattcccggcgattaacatcctttgtgttt 45355434  T
Q  253 tgaaagatcatttctaccctcctaaataaccgcaatatacccacattt--tttggttacatatccac 317  Q
     |||||| |||||||||||||||||  ||||||||||||||||| |||  |||||||||||||||||    
T  45355435 agaaagaccatttctaccctcctaa--aaccgcaatatacccacgttttctttggttacatatccac 45355499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 317
Target Start/End: Original strand, 45368981 - 45369240
Alignment:
Q  53 tgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatgaat 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||| ||||  ||||||||    
T  45368981 tgtttcatggttacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaat 45369080  T
Q  153 tattcctggtaattttcttttacactatactgcattgtttttattcccaacaaaaagggtgggttttatttattctcggcggttaacatcctctgtgttt 252  Q
    ||||||  | ||| || ||||||||||||||||||||||||    | || ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  45369081 tattcccagcaatatt-ttttacactatactgcattgtttt----ctcagcaaaaagggtgggttttatttattcccggcgattaacatcctttgtgttt 45369175  T
Q  253 tgaaagatcatttctaccctcctaaataaccgcaatatacccacattt--tttggttacatatccac 317  Q
     |||||| |||||||||||||||||  ||||||||||||||||| |||  |||||||||||||||||    
T  45369176 agaaagaccatttctaccctcctaa--aaccgcaatatacccacgttttctttggttacatatccac 45369240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 35913618 - 35913726
Alignment:
Q  251 tttgaaagatcatttctaccctcctaaataaccgcaatatacccacattttttggttacatatccacatttatacaccaatttatgtgccactcagactt 350  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||| | ||    
T  35913618 tttgaaagaccatttctaccctcctaaataaccgcaatatactcacgttttttggttacatat-cacgtttatacaccaatttatgtgccactcataatt 35913716  T
Q  351 ttttcttctc 360  Q
    ||||||||||    
T  35913717 ttttcttctc 35913726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 50134 - 50242
Alignment:
Q  51 tttgtttcatggttacaaattgaattcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatccagagaatga 150  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||  ||| ||||||| |||||||| |||||||| ||||  ||||||    
T  50134 tttgtttcatggttacaaattgaattctcagaaatctaagatgagaattatttattttcatgtttggtagacatgcacacaaaaatattccaatgaatga 50233  T
Q  151 attattcct 159  Q
    |||||||||    
T  50234 attattcct 50242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 24565366 - 24565434
Alignment:
Q  74 attcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatcca 142  Q
    ||||| ||||||||||||||||||| ||||||||| || ||||||| |||||||  |||||||| ||||    
T  24565366 attcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattcca 24565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 18870 - 18807
Alignment:
Q  74 attcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaata 137  Q
    ||||| ||||||||||| ||||||| ||||||||| || ||||||| |||||||  ||||||||    
T  18870 attcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaata 18807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 36366938 - 36366875
Alignment:
Q  74 attcccaggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaata 137  Q
    ||||| |||||||||||||| |||| ||||||||| || ||||||| |||||||  ||||||||    
T  36366938 attcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaata 36366875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 46194089 - 46194027
Alignment:
Q  80 aggaatctaagatgggaatcatttattcccatatttggtaaacatgcacccaaaaataatcca 142  Q
    ||||||||||||||||||| ||||||||  || ||||||| |||||||  |||||||| ||||    
T  46194089 aggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattcca 46194027  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 7968407 - 7968453
Alignment:
Q  82 gaatctaagatgggaatcatttattcccatatttggtaaacatgcac 128  Q
    ||||||||||||||||| |||||||||||| |||| || ||||||||    
T  7968407 gaatctaagatgggaataatttattcccatgtttgatacacatgcac 7968453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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