View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_10 (Length: 310)
Name: NF3732_high_10
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 42030085 - 42029802
Alignment:
| Q |
17 |
aaaagtggcaattctctttcnnnnnnnggtgatttttagagggaaaaaataaatgtaacaaacatatcctatacctcaactggtaatttannnnnnnnnn |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42030085 |
aaaagtggcaattctctttcaaaaaa-ggtgatttttagagggaaaaaa--aatgtaacaaacatatcctatacctcaactggtaatttatttttatttt |
42029989 |
T |
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| Q |
117 |
nnncatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgctgctaatactgtac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42029988 |
tttcatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgctgct-atactgtac |
42029890 |
T |
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| Q |
217 |
aaaacactataacatcgtggaaaagttca-nnnnnnnaagataaagaacgagcaagaccgtggaagagttcattcctacttcatctca |
303 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42029889 |
aaaacactataacatcgtggaaaagttcattttttttaagataaagaacgagcaagaccgtggaagagttcattcctacttcatctca |
42029802 |
T |
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