View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_14 (Length: 248)
Name: NF3732_high_14
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 30351970 - 30352211
Alignment:
| Q |
7 |
gattattctgattacctcttgttaaattccattccaattttttatctatcttatatgaaaatgccaacactagtttactcataatattttcacaatgtat |
106 |
Q |
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| T |
30351970 |
gattatcctgattacctcttgttaaattccattccaattttttatctatcttatatgaaaatgccaacactagtttactcataatattttcacaatgtat |
30352069 |
T |
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| Q |
107 |
gaatgttttaatgtggttaagagaactaagaaacacaaaaatattttgatttgtctggctcattatagtatagcttatttgtaaaggaaggaatgatnnn |
206 |
Q |
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| T |
30352070 |
gaatgttttaatgtggttaagagaactaagaaacacaaaaatattttgatttgtctggctcattatagtatagcttatttgtaaaggaaggaatgataaa |
30352169 |
T |
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| Q |
207 |
nnnnnnttaaatgggagaaaagaacaattgaaagtagtggat |
248 |
Q |
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| T |
30352170 |
aaaaatttaaatgggagaaaagaacatttgaaagtagtggat |
30352211 |
T |
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