View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_16 (Length: 237)
Name: NF3732_high_16
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 2927878 - 2927681
Alignment:
| Q |
16 |
ataaacggttttttggacaccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattataatggaa |
115 |
Q |
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| T |
2927878 |
ataaacggttttttggacaccaatattggtcatagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattataatggaa |
2927779 |
T |
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| Q |
116 |
aatttgtgatggtaacaatattaatgtttggaatgatccttggattcgcagtcattgtttacttccatcatgcttttaaatctaacaaagaacacttg |
213 |
Q |
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| T |
2927778 |
aatttgtgatggtaacaatattaatgtttggaatgatccttggattcgtagtcattgtttgcttccatcatgcttttaaatctaacaaagaacacttg |
2927681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 17086263 - 17086131
Alignment:
| Q |
18 |
aaacggttttttggacaccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaa |
116 |
Q |
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| T |
17086263 |
aaacggtgttttggatgccaatattagccatagtccaagcttcacatggaggaacatttggagcactattcatctcttatcccttggttatagatggaaa |
17086164 |
T |
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| Q |
117 |
atttgtgatggtaacaatattaatgtttggaat |
149 |
Q |
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| T |
17086163 |
atttgtgacggtaacaatatcaatgtttggaat |
17086131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 10533031 - 10532957
Alignment:
| Q |
35 |
ccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata |
109 |
Q |
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| T |
10533031 |
ccaatattggtcgtagtccaagtttcacatggaggagtatctggagcactattccgatgttatttcttgattata |
10532957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 52843203 - 52843062
Alignment:
| Q |
25 |
tttttggacaccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtg |
123 |
Q |
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||||||| | ||| ||||||||| |||||||||||||| |||||| |||||| ||||||||||| || ||||| |||| || || |||||||| ||| |
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| T |
52843203 |
tttttgggcgccactattggtcatagtccaagtttcacgtggaggtgtatttagagcactattctgatgttatctcttggttgtaggtggaaaatcggtg |
52843104 |
T |
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| Q |
124 |
atggtaacaatattaatgtttggaatgatccttggattcgca |
165 |
Q |
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| T |
52843103 |
atggtaatgatattaatgtctggaaagacccatggatccgca |
52843062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 2901657 - 2901781
Alignment:
| Q |
25 |
tttttggacaccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtg |
123 |
Q |
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||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||||||||||| || ||||| | | ||||| |||||||| ||| |
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| T |
2901657 |
tttttgggcgccaatattggtcatagtacaagtttcacatggaggagtatccagagcactattccgatgttatctatgggttataggtggaaaatcggtg |
2901756 |
T |
|
| Q |
124 |
atggtaacaatattaatgtttggaa |
148 |
Q |
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||||||| |||||||||| ||||| |
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| T |
2901757 |
atggtaatgatattaatgtctggaa |
2901781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 1362211 - 1362357
Alignment:
| Q |
25 |
tttttggacaccaatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtg |
123 |
Q |
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||||||| | ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| ||| |
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| T |
1362211 |
tttttgggcgccactattggtcatagtccaagtttcacgtggaggagtatttggagcactattccaatgttatctcttggttataggtggaaaatcggtg |
1362310 |
T |
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| Q |
124 |
atggtaacaatattaatgtttggaatgatccttggattcgcagtcat |
170 |
Q |
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| T |
1362311 |
atggtaatgatattaatgtctggaaagacccatggatccgcactcat |
1362357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 32886239 - 32886129
Alignment:
| Q |
39 |
tattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaatatt |
137 |
Q |
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||||||||| ||||||||||||||||| |||||||| |||| ||||||||| || ||||| |||| ||||| |||||||| || ||||||| ||||| |
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| T |
32886239 |
tattggtcatagtccaagtttcacatgaaggagtatctggatcactattccgatgttatctcttggttataggtggaaaatcggtaatggtaatgatatt |
32886140 |
T |
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| Q |
138 |
aatgtttggaa |
148 |
Q |
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||||| ||||| |
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| T |
32886139 |
aatgtctggaa |
32886129 |
T |
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