View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_3 (Length: 463)
Name: NF3732_high_3
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 5818598 - 5819008
Alignment:
| Q |
15 |
ggatagtctggaatggttgtattcttgagatggaaagctgaagaagatgtaagcacaatctatgaaggactatgatattaaagataaattgatcttgaaa |
114 |
Q |
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| T |
5818598 |
ggatactctggaatggttgtattcttgagatggaaagctgaagaagatgtaagcacaatctatgaaggactatgatattaaagataaattgatcttgaaa |
5818697 |
T |
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| Q |
115 |
gcttcattgtcaaagtagagaacttttaagaaatcataaatgtgattgaaggtcaatgtctattgttagcaaactggtgatgataagttgataacgggaa |
214 |
Q |
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| T |
5818698 |
gcttcattgtcaaagtagagaacttttaagaaatcataaatgtgattgaaggtcaatgtctattgttagcaaactggtgatgataagttgataacgggaa |
5818797 |
T |
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| Q |
215 |
ttgtcaccagagatttggaacatgaacttcaaatatttgagaatgttgcatgtgaagaagatggtaaatagtctaccaccaatcaagttacgaaatcaag |
314 |
Q |
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| T |
5818798 |
ttgtcaccagagatttggaacatgaacttcaaatatttgagaatgttgcatgtgaagaagatggtgaatagtctaccaccaatcaagttaccaaatcaag |
5818897 |
T |
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| Q |
315 |
tatgtgacaaagtgttgcatatgaaaacatgcaagaagcgcataccatgtcgaggttcctgttaaagcaacaagaaagatgaaataaattcattataatg |
414 |
Q |
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| T |
5818898 |
tatgtgac-aattgttgcataggaaaa------------------catgtcgaggttcctattaaagcaacaagaaagatgaaataaattcattctaatg |
5818978 |
T |
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| Q |
415 |
tgtgtggaccttttgaagtgaaatcattgg |
444 |
Q |
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| T |
5818979 |
tgtgtggatattttgaagtgaaatcattgg |
5819008 |
T |
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