View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_7 (Length: 349)
Name: NF3732_high_7
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 31750203 - 31749885
Alignment:
| Q |
20 |
gagacaaagcgggtttggctttccccatccccaaattccatatacttatttgttactccatatgtttcatataag-aaaagttatttgaaacagcttcta |
118 |
Q |
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| T |
31750203 |
gagacgaagcgggtttgactttccccgtccccaaattccatatacttatttgttacttcatatgtttcatataaacaaaagttatttgaaatagcttcta |
31750104 |
T |
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| Q |
119 |
aaaaac-cttgttacacagacaattgagataaactcattttgctaacacgtctactttggtgaaggaaaata-gtcaaacaatacaatctatcttgctta |
216 |
Q |
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| T |
31750103 |
aaaaaaacttgttacatagacaattgagataaactcattttgctaacacgtctactttggtgaaggaaaataagtcaaacaatacaaactatcttgctta |
31750004 |
T |
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| Q |
217 |
ttgaacttgccaaagagagaatgtagaaactaaaaagaatatcatagttaagctagaattaaaccaagaaaagctccctaattaaccaccctgcagtcct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31750003 |
ttgaacttgccaaagagagaatgtagaaactaaaaagaatatcatagttaaactagaattaaaccaagaaaaactccctaattaaccaccctgcagtcct |
31749904 |
T |
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| Q |
317 |
tcctaatctcttgaccacc |
335 |
Q |
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||||||||||||||||||| |
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| T |
31749903 |
tcctaatctcttgaccacc |
31749885 |
T |
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