View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_high_8 (Length: 346)
Name: NF3732_high_8
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 6716325 - 6716602
Alignment:
| Q |
16 |
atacgtcatcttactagaccctagaaagatttatcgggattcactctacttctcaaagtcgagcaaaaaatatgataccacttgttgagactctagaaaa |
115 |
Q |
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| T |
6716325 |
atacatcatcttactagaccctaaaaagatttatcgggattcactctacttctcaaagtccagtaaaatatatgataccacttgttgagactctagaaaa |
6716424 |
T |
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| Q |
116 |
gtgttgagttaaggataacaaaaaatcaatgagtcgatcagaaccacaagagatg-nnnnnnntcctatatcgattcaaaacattaactcgttgaatatg |
214 |
Q |
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| T |
6716425 |
gtgttaagtcaagaataac-aaaaatcaatgagtcgatcagaaccataagagatgaaaaaaaatcccatatcgattcaaaacattaactcgttgaatatg |
6716523 |
T |
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| Q |
215 |
aaacaattctcttaaaaatccaacattttactaatttataatcaattgagagcacttacattttgcacgtatcaaacac |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6716524 |
aaacaattctcttataaatccaacattttactaatttataatcaattgagagcacttacattttgcacgtatcaaacac |
6716602 |
T |
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