View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3732_low_1 (Length: 892)
Name: NF3732_low_1
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 823; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 823; E-Value: 0
Query Start/End: Original strand, 4 - 877
Target Start/End: Original strand, 44926933 - 44927804
Alignment:
| Q |
4 |
tcaagacctgtcgagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacggttccagcgcaggtagaataaaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44926933 |
tcaaaacctgtcgagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacgcttccagcgcaggtagaataaaa |
44927032 |
T |
|
| Q |
104 |
tcacacatttctcatgaaccatgatcatatgttgcttctgctcaattgcaacatttgaacaaggacaaccattcattatcttcatcatttttagtgatta |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927033 |
tcacatatttctcatgaaccatgatcatatgttgcttctgctcaattgcaacatttgaacaaggacaaccattcattatcttcatcatttttagtgatta |
44927132 |
T |
|
| Q |
204 |
gttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgtagtaaggtctaaaatttaacctataaaagtatgattagat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927133 |
gttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgtagtaaggtctaaaatttaacctataaaagtatgattagat |
44927232 |
T |
|
| Q |
304 |
tgttaactatattgaatctacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaatgtccatggttcaa |
403 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927233 |
tgttaactatattgaatttacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaatgtccatggttcaa |
44927332 |
T |
|
| Q |
404 |
tcttgaaaactaatttattaacatgctaacatttgcctataaaaatccatgcaagaatagccactccttaattttgaagcatcttgcaagcgtatgattg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927333 |
tcttgaaaactaatttattaacatgctaacatttgcctataaaaatccgtgcaagaatagcaactccttaattttgaagcatcttgcaagcgtatgattg |
44927432 |
T |
|
| Q |
504 |
catggtttggtttcgctgtatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttc |
603 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927433 |
catggtttggtttcacggtatgatgcagactctcgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttc |
44927532 |
T |
|
| Q |
604 |
cgtctgctgagaagagggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggata |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927533 |
cgtctgctgagaagagggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggata |
44927632 |
T |
|
| Q |
704 |
tagtggaagcgaccttaaggttcagtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttc |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927633 |
tagtggaagcgaccttaaggttcagtttgtttgtcattctctttttc--atattccctgcttctggtttgtcgtgataatgatctcttgacattaatttc |
44927730 |
T |
|
| Q |
804 |
tgtaaacagaacttgtgcaccactgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaaga |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927731 |
tgtaaacagaacttgtgcaccactgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaaga |
44927804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 522 - 877
Target Start/End: Original strand, 44935910 - 44936257
Alignment:
| Q |
522 |
tatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttccgtctgctgagaagaggg |
621 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
44935910 |
tatgatgcagactgttgtttttgagatctgtgattgacatttgtgttcatggcaattttgagtaggatcatggttggtcttccgtctgctgataacaggg |
44936009 |
T |
|
| Q |
622 |
aaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaa |
721 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
44936010 |
aaacaatcttgaaaactattctagctaaggaaaaatctgaaaatatgaacttcgaagagctttcaactatgacagaaggatatagcggaagtgatcttaa |
44936109 |
T |
|
| Q |
722 |
ggttcagtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgc |
821 |
Q |
| |
|
|||| | ||| || || ||||| |||| || |||||||||| ||| || |||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44936110 |
ggttaattttattgatctttctcaatttc-ta-gttccctactt---gttggtggtgata---atctattgacattaatttctgtaaacagaacttgtgc |
44936201 |
T |
|
| Q |
822 |
accactgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaaga |
877 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
44936202 |
atgactgcagcatatcgcccccttaaggagctaatacaacaggagaaggaaaaaga |
44936257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 530 - 853
Target Start/End: Original strand, 45989298 - 45989614
Alignment:
| Q |
530 |
agactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttccgtctgctgagaagagggaaacgatc |
629 |
Q |
| |
|
||||| |||||||||| || | || ||||||||||| |||||||||| | ||||||||| |||||||||||||| |||||||| || |||||||| ||| |
|
|
| T |
45989298 |
agactattgtttttgagatatatgattgacatttctgctcatggcaatctcgagcaggatcatggttggtcttccttctgctgaaaacagggaaactatc |
45989397 |
T |
|
| Q |
630 |
ttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaaggttcagt |
729 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
45989398 |
ttgaaaactcttctagctaaggataaacatgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagtgatcttaaggttcatt |
45989497 |
T |
|
| Q |
730 |
ttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccactgc |
829 |
Q |
| |
|
||||| |||||||||| |||| || || ||||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45989498 |
ttgttggtcattctctatttc-ta-gttacctacttct--tttgtggtgata---atctattgacattaatttatgtaaacagaacttgtgcacgactgc |
45989590 |
T |
|
| Q |
830 |
agcctatcgccccattaaggagct |
853 |
Q |
| |
|
||| ||| || || |||||||||| |
|
|
| T |
45989591 |
agcatattgcgcccttaaggagct |
45989614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 500 - 727
Target Start/End: Original strand, 45994118 - 45994349
Alignment:
| Q |
500 |
attgcatggtttggtttcgctgtatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggt |
599 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||| || |||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
45994118 |
attgcatggtttggtttcatgatatgatgcagactattgtttttgagatatgtgactgacatttctgttcatggcaatcttgagcaggatcatggttggt |
45994217 |
T |
|
| Q |
600 |
cttccgtctgctgagaagagggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacag--- |
696 |
Q |
| |
|
||||| |||||||| || |||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45994218 |
cttccttctgctgaaaacagggaaacaatcttgaaaactcttatagctaaggataaacatgaagatttagacttcaaagagctttcaactatgacagaat |
45994317 |
T |
|
| Q |
697 |
-aaggatatagtggaagcgaccttaaggttca |
727 |
Q |
| |
|
||||||| |||||||| || ||||||||||| |
|
|
| T |
45994318 |
taaggatacagtggaagtgatcttaaggttca |
45994349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 45988774 - 45989097
Alignment:
| Q |
16 |
gagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacggttccagcgcaggtagaataaaatcacacatttct |
115 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
45988774 |
gagaaaattattgttcttgctgccaccaacatgccatttgaccttgatgaagcagttataagacggtttcagcgaaggtagaac-----cacacatttgc |
45988868 |
T |
|
| Q |
116 |
catgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgattagttaggttttc |
214 |
Q |
| |
|
|||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||| || | |||||||||||||| || |
|
|
| T |
45988869 |
catgaatcatgttcacctgttgcttctactcaattgcaatcatttgaacaaggacaagcattcattatcttcaccatcttcattgattagttaggttatc |
45988968 |
T |
|
| Q |
215 |
acaagaataaaaaatgtttctgttaaacctagatttggttaaattttgt----agt-aaggtctaaaatttaacctataaaagtatgattagattgttaa |
309 |
Q |
| |
|
| ||||| ||||| ||||||| ||||| |||||| || ||||||||| ||| ||||||||||||||||||| | ||| |||||||| |||||| | |
|
|
| T |
45988969 |
ataagaaacaaaaaagtttctgataaacatagattacgtaaaattttgttttaagtaaaggtctaaaatttaacctttgaaaatatgattaaattgttca |
45989068 |
T |
|
| Q |
310 |
ctatattgaatctacctttagataaataa |
338 |
Q |
| |
|
||| ||||| |||||| |||||||||||| |
|
|
| T |
45989069 |
ctagattgagtctaccgttagataaataa |
45989097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 44935388 - 44935727
Alignment:
| Q |
16 |
gagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacggttccagcgcaggtagaataaaatcacacatttct |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| || ||||||||| | |
|
|
| T |
44935388 |
gagaaaattactgttcttgctgcaaccaacatgccatttgaccttgatgaagcaattatcagacggtttcagcgcaggtag-----aaccacacatttgt |
44935482 |
T |
|
| Q |
116 |
catgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgattagttaggttttc |
214 |
Q |
| |
|
| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| || || ||||||| |||||||| || |
|
|
| T |
44935483 |
cctgaatcatgatcatctgttgcttctgctcaattgcaatcatttgaacaaggacaaacattcattactttcatgatattcagtgattggttaggttctc |
44935582 |
T |
|
| Q |
215 |
acaagaataaaaaatgtttctgttaaacctagatttggttaaattt---tgtagt-aaggtctaaaatttaacctataaaagtatgattagattgttaac |
310 |
Q |
| |
|
| |||| || ||| | || | ||||| |||||||||| | ||| || ||| |||||||| |||||||||| | ||| |||||||| |||||| || |
|
|
| T |
44935583 |
ataaga--aacaaaagcttttcataaacatagatttggtcgattttttctgaagtaaaggtctacaatttaacctttgaaaatatgattaaattgttcac |
44935680 |
T |
|
| Q |
311 |
tatattgaatctacctttagataaataaatcttgtgctgttaactgt |
357 |
Q |
| |
|
|| ||||| |||| |||||||||||| || |||||| ||| ||||| |
|
|
| T |
44935681 |
tagattgattctagctttagataaatgaactttgtgcagtttactgt |
44935727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 45993670 - 45994044
Alignment:
| Q |
16 |
gagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacggttccagcgcaggtagaataaaatcacacatttct |
115 |
Q |
| |
|
|||||| ||| | |||||||||| || ||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||| |||| ||| | |
|
|
| T |
45993670 |
gagaaaattattattcttgctgctacgaacatgccatttgaccttgatgaagcagttataagacggtttcagcgaaggtagaac-----cacatgtttgt |
45993764 |
T |
|
| Q |
116 |
catgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgattagttaggttttc |
214 |
Q |
| |
|
|||||| |||| |||| |||||||||||| | ||||||| ||||||||||||||| | |||| ||||| |||||||| || | ||||| ||||||| || |
|
|
| T |
45993765 |
catgaatcatgttcatctgttgcttctgcccgattgcaatcatttgaacaaggaccagcatttattatgttcatcatcttcattgatttgttaggtcctc |
45993864 |
T |
|
| Q |
215 |
acaagaataaaaaatgtttctgttaaacctagatttggttaaattttgt----agtaa-ggtctaaaatttaacctataaaagtatgattagattgttaa |
309 |
Q |
| |
|
||||||| |||| ||||||| |||| | |||| ||||||||||| ||||| ||||||||||||||||| | ||| |||||||| ||||| | |
|
|
| T |
45993865 |
acaagaaacaaaatagtttctgataaaaatcaatttcattaaattttgttttaagtaaaggtctaaaatttaaccttttaaaatatgattaaattgtcta |
45993964 |
T |
|
| Q |
310 |
ctatattgaatctacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaa |
389 |
Q |
| |
|
| | ||||| |||||||||||||||||||| ||||||| ||||||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
45993965 |
ccagattgagtctacctttagataaataaaccttgtgcagttaactgtgcaagaataacaagtctggaaactcaccagaa |
45994044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 759 - 877
Target Start/End: Original strand, 45994358 - 45994473
Alignment:
| Q |
759 |
cctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccactgcagcctatcgccccattaaggagctaatgc |
858 |
Q |
| |
|
|||| ||||||||||| ||||||| || |||||||| |||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||| | |
|
|
| T |
45994358 |
cctatttctggtttgtggtgataac---ctattgacattgatttatgtaaagagaacttgtgcatgactgcagcatatcgcccccttaaggagctaatac |
45994454 |
T |
|
| Q |
859 |
aacaggagaaggaaaaaga |
877 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
45994455 |
aacaggagaaagaaaaaga |
45994473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 712
Target Start/End: Complemental strand, 11093793 - 11093660
Alignment:
| Q |
579 |
ttgagcaggataatggttggtcttccgtctgctgagaagagggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaag |
678 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||| |||| | ||||||||| | | ||||| ||||||||| | |||||||||| | |
|
|
| T |
11093793 |
ttgagcaggatcatggttggtcttccatctgctgagaatagggaaatgatccttaaaactcttatgtcaaaggagaaacacgaaaacttagacttcaagg |
11093694 |
T |
|
| Q |
679 |
agctttcaactatgacagaaggatatagtggaag |
712 |
Q |
| |
|
| || |||| ||||||||||||| ||||||||| |
|
|
| T |
11093693 |
aactagcaaccatgacagaaggatttagtggaag |
11093660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 11094414 - 11094346
Alignment:
| Q |
27 |
tgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacggttccagcgcaggta |
95 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
11094414 |
tgttcttgctgctaccaacagaccatttgatcttgatgaagcaattatacgacggtttgagcgcaggta |
11094346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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