View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3732_low_13 (Length: 271)

Name: NF3732_low_13
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3732_low_13
NF3732_low_13
[»] chr1 (3 HSPs)
chr1 (1-146)||(44128205-44128350)
chr1 (1-146)||(44132410-44132555)
chr1 (1-146)||(44140832-44140977)
[»] chr5 (6 HSPs)
chr5 (1-144)||(1504391-1504534)
chr5 (1-146)||(1491627-1491772)
chr5 (1-145)||(1481737-1481881)
chr5 (1-146)||(1477626-1477771)
chr5 (1-146)||(1485473-1485620)
chr5 (24-151)||(1496860-1496987)
[»] chr7 (5 HSPs)
chr7 (1-146)||(5309725-5309870)
chr7 (1-146)||(5314542-5314687)
chr7 (1-146)||(5290082-5290227)
chr7 (1-146)||(5302088-5302233)
chr7 (1-146)||(5283900-5284045)
[»] chr2 (1 HSPs)
chr2 (1-146)||(24165437-24165582)
[»] chr3 (2 HSPs)
chr3 (27-143)||(37863716-37863832)
chr3 (60-143)||(39029608-39029691)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 44128205 - 44128350
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  44128205 aaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtga 44128304  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  44128305 acacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 44132410 - 44132555
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  44132410 aaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtga 44132509  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  44132510 acacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44132555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 44140832 - 44140977
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  44140832 aaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtga 44140931  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  44140932 acacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44140977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1504391 - 1504534
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||| |||| |||||    
T  1504391 aaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtga 1504490  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagt 144  Q
     ||||| |||||||||||||||||||| ||||||||||||||||    
T  1504491 acacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 1504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1491627 - 1491772
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||| ||||||| ||    
T  1491627 aaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagcga 1491726  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     ||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  1491727 acacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1481737 - 1481881
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||| |||| |||||    
T  1481737 aaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaacagtga 1481836  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagta 145  Q
    ||| ||    ||||||||||| ||||| |||||||||||||||||    
T  1481837 gcataaagtcgaactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1477626 - 1477771
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| ||||| |||||  ||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||| ||||| |||||| |||| |||||    
T  1477626 aaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaacaaagcacatatcctgatttttacttcaaaatcacaaacagtga 1477725  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
    ||||||   |||||| ||||| ||||| ||||||||||||||||||    
T  1477726 gcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtat 1477771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1485473 - 1485620
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttc--tactttaaaatcgcaaatagt 98  Q
    |||| ||||||| ||| |||||||| || |||||||||||| ||||||||||| ||||||| |||||||||||||||  ||||| | ||||||||||||     
T  1485473 aaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgcaaatagc 1485572  T
Q  99 gagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
    |||||||||||  |||||| ||||||||| || ||||| |||||||||    
T  1485573 gagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtat 1485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 1496860 - 1496987
Alignment:
Q  24 attggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagaga 123  Q
    |||||||||||||||||| |||||||| || ||||||| |||||||||||| |||| || | | || |||| | |||||||||||||||| | ||| |||    
T  1496860 attggcactgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaaga 1496959  T
Q  124 aattccaacgcatgtgtaagtataaatt 151  Q
    ||||||| ||||| ||| |||| |||||    
T  1496960 aattccagcgcatatgttagtaaaaatt 1496987  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5309725 - 5309870
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||    
T  5309725 aaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagtga 5309824  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     ||||| |||||||| || |||||||| || |||||||||||||||    
T  5309825 acacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtat 5309870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5314542 - 5314687
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||  ||||||||||    
T  5314542 aaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttttactttaaaattacaaatagtga 5314641  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     |||||   |||||||||||||||||| || |||||||||||||||    
T  5314642 acacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtat 5314687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 5290227 - 5290082
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||  ||||||||||    
T  5290227 aaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtga 5290128  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     ||||| |||||||||||||||||||| || |||||||||||||||    
T  5290127 acacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtat 5290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5302088 - 5302233
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||  ||||||||||    
T  5302088 aaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtga 5302187  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     ||||| |||||||||||||||||||| || |||||||||||||||    
T  5302188 acacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtat 5302233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5283900 - 5284045
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||| |||| |||||    
T  5283900 aaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtatcctgatttttactttaaaatcacaaacagtga 5283999  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
     ||||| |||||||| ||||||||||| || |||||||||||||||    
T  5284000 acacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtat 5284045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 24165582 - 24165437
Alignment:
Q  1 aaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtga 100  Q
    |||| |||||||| || |||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||| | || |||| || ||    
T  24165582 aaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctgatttctactttagagtcacaaacagcga 24165483  T
Q  101 gcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 146  Q
    ||||||||   |||||||||| ||||| |||||||| |||||||||    
T  24165482 gcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtat 24165437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 37863832 - 37863716
Alignment:
Q  27 ggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaat 126  Q
    ||||||||||||||   ||| |||||| | || |||||||||||||| || |||||    ||| |||| ||||| ||||| |||||||||| ||| ||||    
T  37863832 ggcactgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttccgtatcacaaacagtgaacacaaaactgaactcagagaaaaat 37863733  T
Q  127 tccaacgcatgtgtaag 143  Q
    |||| ||||||||||||    
T  37863732 tccagcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 39029608 - 39029691
Alignment:
Q  60 agtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaag 143  Q
    ||||||||||| || ||||||||    ||| ||||||||||||||||||| || || ||||| ||||| || ||||||||||||    
T  39029608 agtacatatccagacttctacttccgcatcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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