View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_low_17 (Length: 245)
Name: NF3732_low_17
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 2927629 - 2927451
Alignment:
| Q |
59 |
tgtcagatagttgtgaatgcattcctcaacaatagcttatatgtgaattaactaggaattaagttatcgtctaattgtattgttatgctttcatc-tatt |
157 |
Q |
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| T |
2927629 |
tgtcagatagttgtgaatgcattcctcaacaataatttatatgtgaattaactaggaattaagttattatctaattgtattgttatgctttcatcttatt |
2927530 |
T |
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| Q |
158 |
gctagttatgatatatatagctttcagtagtaaacaagctaataaagtcaattataattcataatcttgctatagcatctgtg |
240 |
Q |
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| T |
2927529 |
gctagttatg----atatagctttccgtagtaaacaagctaataaagtcaatcataattcataatcttgctagagcatctgtg |
2927451 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 36721364 - 36721420
Alignment:
| Q |
55 |
cgattgtcagatagttgtgaatgcattcctcaacaatagcttatatgtgaattaact |
111 |
Q |
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| T |
36721364 |
cgattgtcaggtagttgtgaatgttgtcctcaacaacagtttatatgtgaatgaact |
36721420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 29085840 - 29085756
Alignment:
| Q |
12 |
aaatttctcttgacctaggccttaaccgggtagtttttgaagtcgattgtcagatagttgtgaatgcattcctcaacaatagctt |
96 |
Q |
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| T |
29085840 |
aaattgctcttgatcttggcctcaatcgggtagtatttgaaatggatggtcaactagttgtgaatgcagtccttaataatagctt |
29085756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 2902747 - 2902851
Alignment:
| Q |
12 |
aaatttctcttgacctaggccttaaccgggtagtttttgaagtcgattgtcagatagttgtgaatgcattcctcaacaatagcttatatgtgaattaact |
111 |
Q |
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| T |
2902747 |
aaattgctcttgaacttggcctgaatcgggtagtatttgaaagtgattgtcaactagttgtgaatgcagtccttaataatagatcttatatgaatgaact |
2902846 |
T |
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| Q |
112 |
aggaa |
116 |
Q |
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| T |
2902847 |
aggaa |
2902851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 27925704 - 27925764
Alignment:
| Q |
56 |
gattgtcagatagttgtgaatgcattcctcaacaatagcttatatgtgaattaactaggaa |
116 |
Q |
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| T |
27925704 |
gattgtcagctagttgtgaattcagtccttaataatagctcctatgtgaatgaactaggaa |
27925764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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