View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3732_low_2 (Length: 834)

Name: NF3732_low_2
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3732_low_2
NF3732_low_2
[»] chr4 (10 HSPs)
chr4 (435-823)||(45858761-45859142)
chr4 (433-781)||(45876731-45877069)
chr4 (93-282)||(45859364-45859557)
chr4 (637-768)||(56208539-56208670)
chr4 (93-270)||(45877974-45878151)
chr4 (631-775)||(47293456-47293600)
chr4 (631-769)||(55705881-55706019)
chr4 (656-764)||(54304249-54304357)
chr4 (151-256)||(56208765-56208870)
chr4 (443-525)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (631-776)||(35854542-35854687)
chr5 (631-707)||(35802504-35802580)
chr5 (633-764)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (626-767)||(24357450-24357591)
chr2 (436-543)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (630-769)||(7972083-7972222)
chr8 (631-764)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 435 - 823
Target Start/End: Complemental strand, 45859142 - 45858761
Alignment:
Q  435 caggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttt 534  Q
    ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||  || | |||||||||||||||    
T  45859142 caggccacatgaagcaaagctatttgccaagagaacacagaatgcttataaacaatttcgagacaaagctgccctttcccgagctatgactgtatgtttt 45859043  T
Q  535 aaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtaga 634  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||    |||||||||||| ||||||||| ||||||||||||||    
T  45859042 aaatttatttaagaaaaatctattttccatgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtcctgtcactaggtaga 45858947  T
Q  635 caagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgct 734  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  45858946 caagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgct 45858847  T
Q  735 atagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaacacctttattttgatgtctgttgatttatttgatgat 823  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||| |||| ||   |||||||||||||||||||||||||| ||||    
T  45858846 atagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaagac---tattttgatgtctgttgatttatttgctgat 45858761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 433 - 781
Target Start/End: Complemental strand, 45877069 - 45876731
Alignment:
Q  433 tgcaggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtt 532  Q
    ||||||||||||||||||| |||||||||||||    || | ||| |||||||||||||||| || || || ||| | || |||||||||||||||||||    
T  45877069 tgcaggccacatgaagcagagctatttgccaagtctgcacagaatttttataaacaatttcgtgataaggcggctttttccagatcaatgactgtatgtt 45876970  T
Q  533 ttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggta 632  Q
    ||||||| ||  |||||||| ||||||||  ||||||||||||||||  ||  ||| ||||    ||||||||    ||||||| ||  ||| |||||||    
T  45876969 ttaaattcatacaagaaaaagctattttc--tgttttctgttcttcccccttctatgtcca----atagttac----agctactatcccgtcgctaggta 45876880  T
Q  633 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 732  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  45876879 gacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattg 45876780  T
Q  733 ctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt 781  Q
    ||||||| ||| |||| ||  |||||||||||||||| |||||||||||    
T  45876779 ctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt 45876731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 45859557 - 45859364
Alignment:
Q  93 tatattcttcttgggttttgtaatctactaacttgatgacataacttacttttgtagaaaaatttaactatgagaaacttcataagaggattggcttcaa 192  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||||||||||| || ||  ||||||||||||    
T  45859557 tatattcttcttgagttttgtaatctactagcttgatgacataagttacttatgtaggaaaatttatctatgagaaacttgatgaggagattggcttcaa 45859458  T
Q  193 caaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttcttttaggtt----atagattttgttcatttatacatg 282  Q
    ||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||     ||||||||||||||||||| ||||    
T  45859457 caaagaacttatatcaaggggtcaatatgccgagatctttgcagctgatcatcgttcttttaggtgcctgatagattttgttcatttattcatg 45859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 637 - 768
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  637 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 736  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  737 agccaaactgaaggccgatatacctcaagaca 768  Q
    ||| ||| ||||||| | ||||||||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 45878151 - 45877974
Alignment:
Q  93 tatattcttcttgggttttgtaatctactaacttgatgacataacttacttttgtagaaaaatttaactatgagaaacttcataagaggattggcttcaa 192  Q
    |||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| |  || ||||||| || ||| |||||| |||||    
T  45878151 tatattctccttgggttttataatctattaagttgatgacataacttacttttgtaggaaaatttagccttgggaaactttatgagaagattggtttcaa 45878052  T
Q  193 caaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttcttttaggttatagattttgtt 270  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| |||||||  |||| ||||||    
T  45878051 caaagaaattatatcaaggggtaaatatgccgagctccttgcagctgaacaacgttcctttaggtagtagaatttgtt 45877974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 631 - 775
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  631 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 730  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  731 tgctatagccaaactgaaggccgatatacctcaagacagtcaggt 775  Q
    ||||||||| ||| |||||||| ||||||||||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 631 - 769
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
Q  631 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 730  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  731 tgctatagccaaactgaaggccgatatacctcaagacag 769  Q
    ||||||  | ||| |||| ||  ||||||||||| ||||    
T  55705981 tgctattacaaaattgaaagctaatatacctcaaaacag 55706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 656 - 764
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  656 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 755  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  756 atacctcaa 764  Q
    |||||||||    
T  54304349 atacctcaa 54304357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 56208870 - 56208765
Alignment:
Q  151 aaaatttaactatgagaaacttcataagaggattggcttcaacaaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttct 250  Q
    ||||||||||| |||||||||| |  ||| ||||||  ||||||||||||||||||| | |||||||||| |||||||   ||| | |||||| ||||||    
T  56208870 aaaatttaactttgagaaactttaagagaagattggtctcaacaaagaagttatatccaagggtaaatattccgagcttaatgatgttgatcagcgttct 56208771  T
Q  251 tttagg 256  Q
    ||||||    
T  56208770 tttagg 56208765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 525
Target Start/End: Complemental strand, 56208760 - 56208678
Alignment:
Q  443 atgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgact 525  Q
    ||||||||| ||||||||| |||||| || || || ||||||||||||||||||| || || ||||| || ||||||||||||    
T  56208760 atgaagcagagctatttgctaagagagcacaacatatttataaacaatttcgagataatgcggctctttccagatcaatgact 56208678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 631 - 776
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  631 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 730  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  731 tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt 776  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 631 - 707
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  631 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 707  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 633 - 764
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  633 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 732  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  733 ctatagccaaactgaaggccgatatacctcaa 764  Q
    |||| || ||| | |||||| |||||||||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 626 - 767
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  626 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 725  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  726 gctattgctatagccaaactgaaggccgatatacctcaagac 767  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 436 - 543
Target Start/End: Original strand, 24357269 - 24357376
Alignment:
Q  436 aggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttta 535  Q
    |||||| ||||||||| ||||||||||||     || | ||||  |||||||||||||||||||| || ||| | || ||||| ||||||||||||| ||    
T  24357269 aggccagatgaagcagagctatttgccaaatctgcacagaatgcatataaacaatttcgagacaaggcagctttatccagatctatgactgtatgttcta 24357368  T
Q  536 aatttatt 543  Q
    ||||||||    
T  24357369 aatttatt 24357376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 630 - 769
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
Q  630 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 729  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  730 ttgctatagccaaactgaaggccgatatacctcaagacag 769  Q
    |||||||||| ||| |||||||| || | |||||| ||||    
T  7972122 ttgctatagcaaaattgaaggccaatcttcctcaaaacag 7972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 631 - 764
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
Q  631 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 730  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  731 tgctatagccaaactgaaggccgatatacctcaa 764  Q
    ||||||||| ||| |||||||| |||| ||||||    
T  7961751 tgctatagcaaaattgaaggccaatattcctcaa 7961718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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