View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_low_20 (Length: 220)
Name: NF3732_low_20
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 44886513 - 44886452
Alignment:
| Q |
140 |
ttgaacaaaacttggaaaagattatttttccatgccaatgaataaagggttgattacaatac |
201 |
Q |
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| T |
44886513 |
ttgaacaaaacttggaaaagattatttttccatgccaatgaataaagggttgattgcaatac |
44886452 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 44886642 - 44886578
Alignment:
| Q |
13 |
ataatactaaaatcaattacctccgacgaagtgaccatatcattattctataccgtgtacttcgt |
77 |
Q |
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| T |
44886642 |
ataatactaaaaccaattatctccgacgaagtgaccatatcattattctataccgtgtacttcgt |
44886578 |
T |
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