View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_low_3 (Length: 642)
Name: NF3732_low_3
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 35384810 - 35385012
Alignment:
| Q |
16 |
atactgaacatatttaagcatctaaaatgagaagtccgtcaatagataatccttatgtctcttcattgatctctctatgaccataattttattgctataa |
115 |
Q |
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| T |
35384810 |
atactgaacatatttaagcatctaaaatgagaagtccgtcaatagataatccttatgtctcttcattgatctctctatgatcataattttattgctataa |
35384909 |
T |
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| Q |
116 |
ttttgaaatacagataatccttatgtctcttctttgatctctctgaccataatagtgagtggcagatctgtttggaagtccataaatgccatggcctccg |
215 |
Q |
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| T |
35384910 |
ttttgaaatagagataatccttatgtctcttcattgatctctctgaccataatagtgagtggcagatctgtttggaagtccataaatgccatggcctccg |
35385009 |
T |
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| Q |
216 |
ctt |
218 |
Q |
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||| |
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| T |
35385010 |
ctt |
35385012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 332 - 517
Target Start/End: Original strand, 35385081 - 35385268
Alignment:
| Q |
332 |
atttctatgacatgaaccaaatatataataatgtaaatgatagatagttgctcagaaacaatacactttatagatcgtgtacaatgtcaaatgagcaacg |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
35385081 |
atttctatgacatgaaccaaatatataataatgtaagtgatagatagttgctcataaacaatacactttatagatcgtgtataatgtcaaatgaacaacg |
35385180 |
T |
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| Q |
432 |
gttcttccatctacgtagacatatgcgggtcaaaaagtaagttcatgagaatat--gattcatttcaaacataaaatatatgcgcttt |
517 |
Q |
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| T |
35385181 |
gttcttccatctacgtagatatatgcggtttaagaaatcagttcatgagaatatgagattcatttcaaacataaaatatatgcgcttt |
35385268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 35385304 - 35385410
Alignment:
| Q |
529 |
tcctatggaattagtggaaattaagtgatttatttgtacatgacnnnnnnnnnc-aagatttgtatatgatttttacgagtttcaattataatatgttag |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35385304 |
tcctatggaattagtggaaattaagtgatttatttgtacatgactttttttttccaagatttgtatatgatttttacgagtttcaattataatatgttag |
35385403 |
T |
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| Q |
628 |
tattatc |
634 |
Q |
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||||||| |
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| T |
35385404 |
tattatc |
35385410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 27453182 - 27453082
Alignment:
| Q |
329 |
cgaatttctatgacatgaaccaaatatataataatgtaaatgatagatagttgctcagaaacaatacactttatagatcgtgtacaatgtcaaatgagca |
428 |
Q |
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||||| ||||||||||| |||||||| | |||| ||| |||| ||| | ||||| |||| ||| || || ||||| ||| ||||||||||||||||||| |
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| T |
27453182 |
cgaatctctatgacatggaccaaatacaaaatagtgtgaatgttaggtcgttgcctagaagcaacacgctgtatagctcgagtacaatgtcaaatgagca |
27453083 |
T |
|
| Q |
429 |
a |
429 |
Q |
| |
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| T |
27453082 |
a |
27453082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 16000311 - 16000405
Alignment:
| Q |
335 |
tctatgacatgaaccaaatatataataatgtaaatgatagatagttgctcagaaacaatacactttatagatcgtgtacaatgtcaaatgagcaa |
429 |
Q |
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||||||||||| || || |||| |||| ||| |||| ||| | ||||| || || |||| |||| ||||| ||| |||||||||||||||||||| |
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| T |
16000311 |
tctatgacatggactaactataaaatagtgtgaatgttaggtcgttgcccaaaagcaatgcactgtatagctcgagtacaatgtcaaatgagcaa |
16000405 |
T |
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