View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3732_low_7 (Length: 446)
Name: NF3732_low_7
Description: NF3732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3732_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 88 - 322
Target Start/End: Complemental strand, 12515066 - 12514832
Alignment:
| Q |
88 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaaataaagaaaataggaacagaagc |
187 |
Q |
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| T |
12515066 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaaataaagaaaataggaacagaagc |
12514967 |
T |
|
| Q |
188 |
accatgaacaatggctccaatagatccaataaacattaagacataatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttcnnnn |
287 |
Q |
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| T |
12514966 |
accatgaacaatggctccaatagatccaataaacattaagacataatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttctttt |
12514867 |
T |
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| Q |
288 |
nnnctctcatcaccttctttagattccatttgact |
322 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
12514866 |
tttctctcatcaccttctttggattccatttgact |
12514832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 177048 - 176967
Alignment:
| Q |
352 |
tagataacaaaatgaaatgaataccttcttcaccaaaagctacacgacattacagt---attagtcgcaagtcgcaacaaac |
430 |
Q |
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| T |
177048 |
tagataacaaaatgaaatgaataccttcttcaccaaaagctacacgacattacagtattattagtcgcaagtcgcaacaaac |
176967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 27718158 - 27718051
Alignment:
| Q |
88 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaaataaagaaaataggaacagaagc |
187 |
Q |
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|||||||||||| ||| || ||||| ||||| ||||| |||||||| || | ||||| || | || |||||||| |||||||||| ||||||||| || |
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| T |
27718158 |
ccttggcaacttggtgggaagcttctttaggaaaaaggtaagccaaacctacgacattaataattttcccaaagaagataaagaaaacaggaacagatgc |
27718059 |
T |
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| Q |
188 |
accatgaa |
195 |
Q |
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|||||||| |
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| T |
27718058 |
accatgaa |
27718051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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