View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3733_high_1 (Length: 575)
Name: NF3733_high_1
Description: NF3733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3733_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 15 - 563
Target Start/End: Original strand, 39312848 - 39313395
Alignment:
| Q |
15 |
agatggggcatccctgtcaactgtcacattcattcctcccccattgtctgcagatacatatttctgcaatgccactgacttaagctgcacttctgtccca |
114 |
Q |
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| T |
39312848 |
agatggggcatccctatcaactgtcacattcattcctcccccattgtctgcagatacatacttctgcaatttcactgacttaagctgcacttctgtccca |
39312947 |
T |
|
| Q |
115 |
tcctacattttttacatatatcatcaacacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgta |
214 |
Q |
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| T |
39312948 |
tcctacattttttacatatatcatcagcacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgta |
39313047 |
T |
|
| Q |
215 |
tcaacagtactgaaatatccctaaatttatcttctgttagtaatttcgtgcacaaattgactaacgaaagacacacatgaggacgaaattaaccaacgaa |
314 |
Q |
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| T |
39313048 |
tcaacattactgaaatatccctaaatttatcttctgttagtaatttcgtgcacaaattgactaatggaagacacacatgaggacgaaattaaccaacgaa |
39313147 |
T |
|
| Q |
315 |
aacaaaaacgaggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattcatgttctgcggtgacaacgagtgacacatt |
414 |
Q |
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| T |
39313148 |
aacaaaaacgaggacc-aactaactaacgaaagacacattcgggtatgattttgtaattttgatacattcaagttctgcggtgacaacgagggacacatt |
39313246 |
T |
|
| Q |
415 |
aacgaatatgaatatttactaaaataataaagtatctcgccgaaaaatgagtgaaacaaatgtaaagtcactcacaagcatgtctccattggcaatgcca |
514 |
Q |
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| T |
39313247 |
aacgaatatgaatatttactaaaataataaagtatctcgccgaaaaatgagtgaaacaaatgtaaagtcactcacaagcatgtctccattggcaatgcca |
39313346 |
T |
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| Q |
515 |
tcaaacaaagaaggtttgatccaaccttcaataacaagccaccctccta |
563 |
Q |
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| T |
39313347 |
tcaaacaaagaaggtttgatccaaccttcaataacaagccaccctccta |
39313395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 5553259 - 5553200
Alignment:
| Q |
326 |
ggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattca |
385 |
Q |
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| T |
5553259 |
ggaccaaactgactaacaaaagacacatttgggtatctttttgtaattttaatacattca |
5553200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 10092546 - 10092592
Alignment:
| Q |
244 |
tcttctgttagtaatttcgtgcac-aaattgactaacgaaagacaca |
289 |
Q |
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| T |
10092546 |
tcttctgttagtaattttgtggaccaaattgactaacgaaagacaca |
10092592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 42298267 - 42298324
Alignment:
| Q |
323 |
cgaggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatac |
380 |
Q |
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| T |
42298267 |
cgaggaccaaaatgattaacaaaagacacatttaggtatgcctttgtaatgttgatac |
42298324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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