View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_1 (Length: 782)
Name: NF3734_high_1
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 331 - 772
Target Start/End: Complemental strand, 34908130 - 34907689
Alignment:
| Q |
331 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgttaccccattccttataataagcattaaatttgagtggctaagt |
430 |
Q |
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| T |
34908130 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgctaccccattccttataataaacattaaatttgagtggctaagt |
34908031 |
T |
|
| Q |
431 |
gtatgtataaaccattccgatgtctatacctagatgactaatcctttgagttgattctttagaagtttatgtactgcattataggaaaacattagttgtg |
530 |
Q |
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| T |
34908030 |
gtatgtataaaccgttccgatgtctatacctagatgactaatcctttgagttgattatttagaagtttatgtactgcattataggaaaacattagttgtg |
34907931 |
T |
|
| Q |
531 |
aggatgtctcaacttgattagtctatctcacctgtagatctggcctagagcacaatatgattagatctgcacttttcaccttctttgaattattggtgtt |
630 |
Q |
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| T |
34907930 |
aggatgtttcaacttgattagtctatctcacctgtagatctggcctagagcacaatatgattagatctgcacgtttcaccttctttgaattattggtgtt |
34907831 |
T |
|
| Q |
631 |
aatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgattaaacttagcatatttgta |
730 |
Q |
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| T |
34907830 |
aatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgattaaacttagcatatttgta |
34907731 |
T |
|
| Q |
731 |
tgttactttgttcagtactttgcccatttttaagttcctttg |
772 |
Q |
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| T |
34907730 |
tgttactttgttcagtactttgcccatttttaagttcctttg |
34907689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 34908505 - 34908210
Alignment:
| Q |
17 |
agatacaatgtagttaatggttgggatttacttcccaacctgtcatgctttttacaaaaccagttgtcattgttctataggaattacatataaatgatca |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908505 |
agatataatgtagttaatggttgggatttacttcccaacctgtcatgctgtttacaaaaccagttgtcattgttctataggaattacatataaatgatcg |
34908406 |
T |
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| Q |
117 |
attaaagattcctacgacatccaccacctccaccaagcccaagcatgttaggcagggttgtttgtgatgataaataaatttcagtaaagtacaaccatcc |
216 |
Q |
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| T |
34908405 |
attaaagattcctacgacatccaccacctccaccaagcccaagcctgttaggcagggttatttgtgatgataaataaatttcagtaaagtacaaccatcc |
34908306 |
T |
|
| Q |
217 |
ctcctactagtggttaaatattaaacaagccgttgtaaaccnnnnnnntgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
312 |
Q |
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| T |
34908305 |
ctcctactagtggttaaatattaaacaagccgttgtaaaccaagaaaatgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
34908210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 514 - 762
Target Start/End: Complemental strand, 34894382 - 34894137
Alignment:
| Q |
514 |
ggaaaacattagttgtgaggatgtctcaacttgattagtctatctca-cctgtagatctggcctagagcacaatatgattagatctgcacttttcacctt |
612 |
Q |
| |
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||||||| | |||| ||||||||||||||||||||||| |||||| | |||||||| |||| ||||| || ||||| | |||||||| ||||||||| |
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| T |
34894382 |
ggaaaacgtcagttatgaggatgtctcaacttgattaggctatctaaacctgtagacctggtgtagagaactatatgtgttgatctgcatgtttcacctt |
34894283 |
T |
|
| Q |
613 |
ctttgaattattggtgttaatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgatt |
712 |
Q |
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|||||||||||||||||||||| | || ||||||||| ||||| |||||||||| | ||| |||| ||| ||| |||||||||||||||||||| |
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| T |
34894282 |
ctttgaattattggtgttaatggaa----aagtcagcataaacggagagacttcctaataaatgaattacctgtgtgtgaatatttatgattttgtgatt |
34894187 |
T |
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| Q |
713 |
aaacttagcatatttgtatgttactttgttcagtactttgcccattttta |
762 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||| ||| |||| |||| |
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| T |
34894186 |
aaacttggcatctttgtatgttattttgttcagtacgttgtccatgttta |
34894137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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