View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_10 (Length: 305)
Name: NF3734_high_10
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_10 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 43947747 - 43947474
Alignment:
| Q |
14 |
atatcatacaatcccacttaaataaacaaacttttcacaacattccaagaacagaaaaaacaaaagcatgcagaaatagcattgaaataagaaacccact |
113 |
Q |
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| T |
43947747 |
atatcatacaatcccacttaaataaacaaacttttcacaacattccaagaacagaaaaaacaaaagcatgcagaaatagcattgaaataagaaacccact |
43947648 |
T |
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| Q |
114 |
tgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatc |
213 |
Q |
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| T |
43947647 |
tgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatc |
43947548 |
T |
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| Q |
214 |
taatttagttaagggtccacaaaaggctaaatcccaataaggaaataataactataaaaattgacctcaaacac |
287 |
Q |
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| T |
43947547 |
taatttagttaagggtccacaaaaggctaaatcccaataaggaaataataactataaaaattgacctcaaacac |
43947474 |
T |
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Target: scaffold1452 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 681 - 791
Alignment:
| Q |
105 |
aaacccacttgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgt |
204 |
Q |
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| T |
681 |
aaacccacttgtagagtcactagtcggtcatcgatctgcaattctttggtgacaaagtcagcaccgattgtagctttatattgctgactgaacttcttgt |
780 |
T |
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| Q |
205 |
gcacatatcta |
215 |
Q |
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| T |
781 |
gcacatatcta |
791 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 16139238 - 16139157
Alignment:
| Q |
134 |
gtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatcta |
215 |
Q |
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| T |
16139238 |
gtcaatttgcagttcactagggacagaaccagcaccgattgtagctttatatcggtgactaaacttcttgtgcacatatcta |
16139157 |
T |
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