View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_12 (Length: 255)
Name: NF3734_high_12
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 386504 - 386275
Alignment:
| Q |
10 |
ttattctcataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcac |
109 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386504 |
ttattctcataagcaaccttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcac |
386405 |
T |
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| Q |
110 |
cttcctccaattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaa |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
386404 |
cttcctccaattcataatcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaa |
386305 |
T |
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| Q |
210 |
cgagtgggccttatgctttgttgcactaag |
239 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
386304 |
cgagtgggccttatgctttgttgcactaag |
386275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 38729038 - 38729267
Alignment:
| Q |
10 |
ttattctcataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcac |
109 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38729038 |
ttattctcataagcaaccttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcac |
38729137 |
T |
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| Q |
110 |
cttcctccaattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
38729138 |
cttcctccaattcataatcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaa |
38729237 |
T |
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| Q |
210 |
cgagtgggccttatgctttgttgcactaag |
239 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
38729238 |
cgagtgcgccttatgctttgttgcactaag |
38729267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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