View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_20 (Length: 226)
Name: NF3734_high_20
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51368834 - 51369052
Alignment:
| Q |
1 |
atcgtgcaagacgaggataatgaagaaatatgagaattagtatatgttcagatttggcgcgatagaaaagcactgaagcatattgaataaaaataactat |
100 |
Q |
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| T |
51368834 |
atcgtgcaagacgaggataatgaagagatatgagaattagtatatgttcagatttggcacgatagaaaagcactgaagcatattgaataaaaataaccat |
51368933 |
T |
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| Q |
101 |
ccatcacattaatcaggacaataccccaaaatttaacaaaattattatttacaagactacttattattcataaggaatcgcctaaagaataatatccata |
200 |
Q |
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| T |
51368934 |
ccatcacattaatcaggacaatactccaaaa-ttaacaaaattattatttataagactacgtattattcataaggaatcgcctaaagaataatatccata |
51369032 |
T |
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| Q |
201 |
atgacgatcgatgtattctc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
51369033 |
atgacgatcgatgtattctc |
51369052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 51541752 - 51541703
Alignment:
| Q |
47 |
ttcagatttggcgcgatagaaaagcactgaagcatattgaataaaaataa |
96 |
Q |
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|||||||||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
51541752 |
ttcagatttggcacgatagaaaagaacagaagcatgttgaataaaaataa |
51541703 |
T |
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