View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_6 (Length: 418)
Name: NF3734_high_6
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 46069727 - 46069320
Alignment:
| Q |
1 |
attatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaaggtaataacaagacatttttggtggtttcag |
100 |
Q |
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| T |
46069727 |
attatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaagttaataacaagaaatttttggtggtttcag |
46069628 |
T |
|
| Q |
101 |
actttgtgtcggttgttcaacttgtgaagatggggacgaggaatcaacatcctctttaaaagtttgtatgggaaagcttgtaggactccttgtttggaaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46069627 |
actttgtgtcggttgttcaacttgtgaatatggggacgaggaatcaacatcctctttacaagtttgtatgggaaagcttgtaggactccttgtttggaaa |
46069528 |
T |
|
| Q |
201 |
tgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaatttggaggttgaagtattaatgaatgag |
300 |
Q |
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| T |
46069527 |
tgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaatttggagattgaagtattaatcaatgag |
46069428 |
T |
|
| Q |
301 |
atgtaataagtgggaatttaagattcagataataatttttacaaatta-tagagtatttcgggaaagaagattaatcctaattcaaaattttgggaaaga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
46069427 |
atgtaataagtgggaatttaagattcagataataatttttacaaattattagagtatttcggggaagaagatcaatcctaattcaaaattttgggaaaga |
46069328 |
T |
|
| Q |
400 |
tgatgatg |
407 |
Q |
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|||||||| |
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| T |
46069327 |
tgatgatg |
46069320 |
T |
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