View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_high_8 (Length: 340)
Name: NF3734_high_8
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 38497922 - 38498096
Alignment:
| Q |
8 |
catcatcatgatcatcgctcttacgaacaaaatcaacacaatacttctctttatcctcttcatcagacaattctcccttaactaacttatcatacaactc |
107 |
Q |
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| T |
38497922 |
catcatcatgatcatcgctcttacgaacaaaatcaacacaatacttctctttatcctcttcatcagacaattctcccttaactaacttatcatacaactc |
38498021 |
T |
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| Q |
108 |
agccttcttctccaatgcagcatagctcactgatccatctttaatagctttcaactcaagtttatccctaatcat |
182 |
Q |
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| T |
38498022 |
agccttcttctccaatgcagcatagctcactgatccatctttaatagctttcaactcaagtttatccctaatcat |
38498096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 216 - 331
Target Start/End: Original strand, 38498130 - 38498245
Alignment:
| Q |
216 |
ttaatctcaattatcaacaaacagaaattcaattaggtattatctaaagatataaatgtatgtttggttccactttagaagcaattctgacaggtttggc |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38498130 |
ttaatctcaattatcaacaaacacaaattcaattaggtattatctaaagatataaatgtatgtttggttccactttagaagcaattctgacaggtttggc |
38498229 |
T |
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| Q |
316 |
tgctcttgagtataat |
331 |
Q |
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|||||||||||||||| |
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| T |
38498230 |
tgctcttgagtataat |
38498245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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