View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_18 (Length: 242)
Name: NF3734_low_18
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40632486 - 40632250
Alignment:
| Q |
1 |
atcaaggacaaaaagaacatcttaaatgtgaatcaaagatttgaaaggttgcaccgtaaatatgaattttgactagttcgaattatagaatttgaaatgt |
100 |
Q |
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| T |
40632486 |
atcaaggacaaaaagaacatcttaaatgtgaatcaaagatttgaaagcttgcaccgtaaatatgaactt-gactagttcgaattatagaatttgaaatgt |
40632388 |
T |
|
| Q |
101 |
ccccaaccctatgaagtatggtttttacacagtcttgaactagtttggattatcaacattgctatataaagcgaacaaaaccatcacaaatgcatagaga |
200 |
Q |
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| T |
40632387 |
ccccagccctatgaagtacggtttttacacagtcttgaactagtttggattataagcattgctatataaagcgaacaaaaccatcatgaatgcgtagaga |
40632288 |
T |
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| Q |
201 |
attaaatagcaaccaatgaaatcatagaattttaattt |
238 |
Q |
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| T |
40632287 |
attaaatagcaaccaatgaaatcatagaattttaattt |
40632250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 17305659 - 17305725
Alignment:
| Q |
155 |
aacattgctatataaagcgaacaaaaccatcacaaatgcatagagaattaaatagcaaccaatgaaa |
221 |
Q |
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| T |
17305659 |
aacattgctatataaagcgaacaaaaccatcacaaaagcattacgaattaaaaaggaaccaatgaaa |
17305725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 27715014 - 27714977
Alignment:
| Q |
153 |
tcaacattgctatataaagcgaacaaaaccatcacaaa |
190 |
Q |
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| T |
27715014 |
tcaacaatgctatataaagcgaataaaaccatcacaaa |
27714977 |
T |
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