View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_2 (Length: 741)
Name: NF3734_low_2
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 320 - 595
Target Start/End: Original strand, 24360499 - 24360780
Alignment:
| Q |
320 |
caactttgttttataatgaagccaagttatttgcttccacttcacataatgannnnnnnnnnnnn------gctactctacctccacacgtgaagctgaa |
413 |
Q |
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| T |
24360499 |
caactttgttttataatgaagccaagttatttgcttccacttcacataatgatctctctctctctctctctgctactctacctccacacgtgaagctgaa |
24360598 |
T |
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| Q |
414 |
gatatataattaacatgtatatcacataattaataataaagaataattacgacggcacatacttaatgatagttatatgcgtgtgtgtaacagttattat |
513 |
Q |
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| T |
24360599 |
gatatataattaacatgtatatcacataattaataataaagaataattacgacggcacatacttaatgatagttatatgcgtgtgtgtaacagttattat |
24360698 |
T |
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| Q |
514 |
tattactattttgttaattttggtgtataagatgatccacttgcttaagcttcattgcctaaagaagtaaaatagactcaaa |
595 |
Q |
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| T |
24360699 |
tattactattttgttaattttggtgtataagatgatccacttgcttaagcttcattgcctaaagaagtaaaatatactcaaa |
24360780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 24360140 - 24360262
Alignment:
| Q |
1 |
atgatgataatgatgatggtgatggttgtggggtttgcttacaaattagggaagagtagtgagagagaaacagaaagaggagttggttggttgatgagtc |
100 |
Q |
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| T |
24360140 |
atgatgataatgatgatggtgatggttgtggggtttgcttacaaattagggaagagtagtgagagagaaacagaaagaggagttggttggttgatgagtc |
24360239 |
T |
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| Q |
101 |
tagttgaaaaagaaaacggtttg |
123 |
Q |
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| T |
24360240 |
tagttgaaaaagaaaacggtttg |
24360262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 623 - 727
Target Start/End: Original strand, 24360808 - 24360912
Alignment:
| Q |
623 |
cgccacttttgatcaaaaagtaacaaaataagagatttggaggtttcttagtctctttatcgatgtacacacgcacacacgtagatacataatgttatcg |
722 |
Q |
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| T |
24360808 |
cgccacttttgatcaaaaagtaacaaaagaagagatttggaggtttcttagtctctttatcgatgtacacacgcacacacgtagatacataatgttatcc |
24360907 |
T |
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| Q |
723 |
ttggt |
727 |
Q |
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||||| |
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| T |
24360908 |
ttggt |
24360912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 24360300 - 24360347
Alignment:
| Q |
157 |
aatatttagatgtgtgtgtgtcttcttgtctttgactccatggccttg |
204 |
Q |
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| T |
24360300 |
aatatttagatgtgtgtgtgtcttcttgtctttgactccatggccttg |
24360347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 24360376 - 24360420
Alignment:
| Q |
233 |
cttcactcacaaggtaatcatcatacatgaatcacagtgtgccag |
277 |
Q |
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| T |
24360376 |
cttcactcacaaggtaatcatcatacatgaatcacagtgtgccag |
24360420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 41832434 - 41832479
Alignment:
| Q |
324 |
tttgttttataatgaagccaagttatttgcttccacttcacataat |
369 |
Q |
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| T |
41832434 |
tttgttttataaccaagctaagttttttgcttccacttcacataat |
41832479 |
T |
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