View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_3 (Length: 515)
Name: NF3734_low_3
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 43672568 - 43672169
Alignment:
| Q |
17 |
agaaaaggcacgtactttcactattgatcacaacattcctcatgtcagattgtctctctcaaacaatgacttcgcatggcatggttggcccctcttagtt |
116 |
Q |
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| T |
43672568 |
agaaaaggcacgtactttcactattgatcacaacattcctcatgtcagattgtctctctcaaacaatgacttcgcatggcatggttggcccctcttagtt |
43672469 |
T |
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| Q |
117 |
cagttagtctctccattcatgttctcttcttgtatttcttgccatttggatgtttttcggcttcatatagtggagctcaataggacacaaactaccaacg |
216 |
Q |
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| T |
43672468 |
cagttagtctctccattcatgttctcttcttgtatttcttgccatttgggtgtttttcggcttcatatagtggagctcaataggacacaaactaccaacg |
43672369 |
T |
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| Q |
217 |
agttttggtctagcattaaagattagactgactcgacgtaacaaatcaatatctgaatctggtagaaaaatgtttctacatctatcgtataagatacttt |
316 |
Q |
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| T |
43672368 |
agttttggtctagcattaaagattagactgactcgacgtaacaaatcaatatttgaatctggtggaaaaatgtttctacatctatcgtataagacacttt |
43672269 |
T |
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| Q |
317 |
aaatatgattatactagcacgagagggaacatatggtaaacaaggagaaagatcttctccatttgtctaaaataaacggagaatgtcatttagtaagtgt |
416 |
Q |
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| T |
43672268 |
gaatatgattatactagcacga----gaacatatggtaaacaaggagaaagatcttctccatttatctaaaataaacggagaatgtcatttagtaagcgt |
43672173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 43672127 - 43672089
Alignment:
| Q |
473 |
tctccaggtttatgaccctcacagaccttaacattatga |
511 |
Q |
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| T |
43672127 |
tctccaggtttatgaccgtcacagaccttaacattatga |
43672089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 28863106 - 28863070
Alignment:
| Q |
364 |
aaagatcttctccatttgtctaaaataaacggagaat |
400 |
Q |
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| T |
28863106 |
aaagatcttctccatttgtttaaaataaatggagaat |
28863070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 4518060 - 4518104
Alignment:
| Q |
366 |
agatcttctccatttgtctaaaataaacggagaatgtcatttagt |
410 |
Q |
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| T |
4518060 |
agatcctctccatttacttaaaataaacggagaatgtcatttagt |
4518104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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