View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_4 (Length: 477)
Name: NF3734_low_4
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 33186688 - 33187133
Alignment:
| Q |
18 |
catattatatatatgtggtcaaataaaggtttatttatgaagatcactaaccatatggaaagccaagtatgtagctcgccatctgtgtcctgtgatatta |
117 |
Q |
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| T |
33186688 |
catattatatatatgtggtcaaataaaggtttatttatgaagatcactaaccatatggaaagccaagtatgtagctcgccatctatgtcctgtgatatta |
33186787 |
T |
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| Q |
118 |
tttgggaaagtttatggaaacagtttatgaaatgtttataagttgttttttaacttattttcattagtttagtaaaaaataactttatttcataagtnnn |
217 |
Q |
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| T |
33186788 |
tttgggaaagtttatggaatcagtttatgaaatgtttataagttgttttttaacttattttcattagtttagtaaaaa-taactttatttcataagttat |
33186886 |
T |
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| Q |
218 |
nnnnnnnnnnnnngatcacttttaggattagggttcatgcaataatagcttaattaaggtatttgtgcaaatataatannnnnnnaatatataaaaaatt |
317 |
Q |
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| T |
33186887 |
atattatatatatgatcacttttatgattagggtttatg-aataatagcttaattaaggtatttgtgcaaatataatatttttttaatatataaaaaatt |
33186985 |
T |
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| Q |
318 |
aaattatgagagacaggcctcgtgtaagatcgtggagagtcattttagcatttataataaaatttacgtataacttatcaagtcacaacatatgtgagca |
417 |
Q |
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| T |
33186986 |
aaattatgagagacaggcctcgtgtaagatcgtggagagtcattttagcatttataataaaatttatgtataacttatcaagtcacaacatatgtgagca |
33187085 |
T |
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| Q |
418 |
gaaggtctaaccatatgtgataaccgtgaattatataaacataacctatg |
467 |
Q |
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| T |
33187086 |
gaaggtctaaccatatgtgataaccgtgaat--tataaacataacctatg |
33187133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 11695971 - 11695896
Alignment:
| Q |
105 |
tcctgtgatattatttgggaaagtttatggaaacagtttatgaaatgtttataagttgttttttaacttattttcat |
181 |
Q |
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| T |
11695971 |
tcctgtgagattgtttgggaaagcatatggaaacagtttatgacatgtccataagctg-ttttcaacttattttcat |
11695896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 3924710 - 3924673
Alignment:
| Q |
129 |
ttatggaaacagtttatgaaatgtttataagttgtttt |
166 |
Q |
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| T |
3924710 |
ttatgaaaacaatttatgaaatgtttataagttgtttt |
3924673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 44747158 - 44747195
Alignment:
| Q |
129 |
ttatggaaacagtttatgaaatgtttataagttgtttt |
166 |
Q |
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| T |
44747158 |
ttatggaaacagtttatgacatgttcataagttgtttt |
44747195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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