View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3734_low_7 (Length: 405)

Name: NF3734_low_7
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3734_low_7
NF3734_low_7
[»] chr2 (2 HSPs)
chr2 (114-276)||(10983066-10983228)
chr2 (114-161)||(3081203-3081251)
[»] chr6 (3 HSPs)
chr6 (7-115)||(1827532-1827638)
chr6 (21-63)||(1832348-1832390)
chr6 (14-63)||(1836132-1836181)
[»] chr3 (1 HSPs)
chr3 (112-180)||(33365923-33365992)
[»] chr1 (4 HSPs)
chr1 (113-196)||(49195449-49195534)
chr1 (112-161)||(40908314-40908364)
chr1 (113-180)||(12606644-12606712)
chr1 (114-161)||(46566569-46566617)
[»] chr4 (2 HSPs)
chr4 (114-196)||(31525493-31525577)
chr4 (114-161)||(23538245-23538293)
[»] chr5 (2 HSPs)
chr5 (114-180)||(12870155-12870222)
chr5 (114-161)||(43469632-43469680)
[»] chr7 (3 HSPs)
chr7 (114-161)||(10646135-10646183)
chr7 (11-63)||(46382938-46382990)
chr7 (118-161)||(4658704-4658748)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 10983228 - 10983066
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagtttgccctaaacaatcctgtttttccctcttaatctgtcattaattgcaaggcttatctgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||  |||||||||||||||||||||||||     
T  10983228 atcctttattataaaagccagacttgatgagctggcagtttgccctaatcaatcctgattttccctcctaattcgtcattaattgcaaggcttatctgcc 10983129  T
Q  214 aaccacccactacatattagcctcattaaatgtgacctttcatgtacatcaaacaaccaatca 276  Q
    ||||||||||| | | || | | |||| | |||||||||||||||||||||  ||||||||||    
T  10983128 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatcattcaaccaatca 10983066  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 3081203 - 3081251
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaa 3081251  T

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Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 1827532 - 1827638
Alignment:
Q  7 aaaagtaattagtattctttggtcctacaaaagagacagtgttctatggtttggtccggccttctgtaacatgttttgtttcgaacgtgttttgcaattc 106  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  1827532 aaaagtaattagtattctttggtcctacaaaagaga--gtgttctatggtttggtccggccttgtgtaacatgttttgttctgaacgtgttttgcaattc 1827629  T
Q  107 caaaaatat 115  Q
    |||||||||    
T  1827630 caaaaatat 1827638  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 1832348 - 1832390
Alignment:
Q  21 ttctttggtcctacaaaagagacagtgttctatggtttggtcc 63  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  1832348 ttctttggtcttacaaaagagacagtggtctatggtttggtcc 1832390  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 1836132 - 1836181
Alignment:
Q  14 attagtattctttggtcctacaaaagagacagtgttctatggtttggtcc 63  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||||||||    
T  1836132 attagtatactttggtctaacaaaagagacagtggtctatggtttggtcc 1836181  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 33365923 - 33365992
Alignment:
Q  112 atatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  33365923 atatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctc 33365992  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 49195534 - 49195449
Alignment:
Q  113 tatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccct-cttaatctgtcattaat 196  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| | |||||||| ||||||    
T  49195534 tatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaat 49195449  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 40908314 - 40908364
Alignment:
Q  112 atatcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  40908314 atatcctttactataaaagccagacttgatgagctggcagtgttgccctaa 40908364  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 12606712 - 12606644
Alignment:
Q  113 tatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctc 180  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||||| || ||||  |||||||||    
T  12606712 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctc 12606644  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 46566569 - 46566617
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaa 46566617  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 31525577 - 31525493
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccct-cttaatctgtcattaat 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| | |||||||| ||||||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaat 31525493  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 23538293 - 23538245
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    |||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaa 23538245  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 12870155 - 12870222
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctc 180  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| || | |||||||||||||    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctc 12870222  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 43469680 - 43469632
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaa 43469632  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 10646183 - 10646135
Alignment:
Q  114 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 161  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaa 10646135  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 46382990 - 46382938
Alignment:
Q  11 gtaattagtattctttggtcctacaaaagagacagtgttctatggtttggtcc 63  Q
    |||||| |||| ||||||||  ||||||||||||||| |||||||||||||||    
T  46382990 gtaattggtatactttggtctaacaaaagagacagtggtctatggtttggtcc 46382938  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 4658748 - 4658704
Alignment:
Q  118 tttattataaaagccagacttgatgagctggca-gtttgccctaa 161  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  4658748 tttattataaaagctagacttgatgagctagcatgtttgccctaa 4658704  T

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