View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_8 (Length: 391)
Name: NF3734_low_8
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 129 - 376
Target Start/End: Complemental strand, 42037072 - 42036825
Alignment:
| Q |
129 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaatttggtttccatc |
228 |
Q |
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| T |
42037072 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaattcggtttccatc |
42036973 |
T |
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| Q |
229 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcgagccaattacttccataacagatttggagga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42036972 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcaagccaattacttccataacagatttggagga |
42036873 |
T |
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| Q |
329 |
attaagatatctttacaacataacttgtcaatataaccattttccaca |
376 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42036872 |
attaagatatctttacaacataacttgtaaatataaccattttccaca |
42036825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 35588948 - 35589056
Alignment:
| Q |
20 |
ataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggatcagtagcaaattgtaactaattgtgagatattctagtttag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35588948 |
ataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggaccagtagcaaattgtaactaattgtgagatattctagtttag |
35589047 |
T |
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| Q |
120 |
tcgataaca |
128 |
Q |
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| T |
35589048 |
tcgataaca |
35589056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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