View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3734_low_9 (Length: 354)
Name: NF3734_low_9
Description: NF3734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3734_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 2488870 - 2489196
Alignment:
| Q |
18 |
aagagattatcgtgtcagcaatttcgtatcatttaatgaagaacaaagagcctgaatacagaaatggaaaactgatcattccatgcaacaggttagaccg |
117 |
Q |
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| T |
2488870 |
aagagattatcgtgtcagcaatttcgtatcatataatgaagaacaaagagcctgaatacagaaatggaaaactgatcattccatgcaacaggttagaccg |
2488969 |
T |
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| Q |
118 |
gcaaattttgctgcatgaacaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatgctctgggaatattccaggcgggaaaat |
217 |
Q |
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| T |
2488970 |
gcaaattttgctgcatgaacaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatgctctgggaatattccaggcgggaaaat |
2489069 |
T |
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| Q |
218 |
tcagtgacagagattcattgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattgtatttagttgtgaataatatctaccag |
317 |
Q |
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| T |
2489070 |
tcggtgacagagattcattgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattgtatttagttgtgaataatatctaccag |
2489169 |
T |
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| Q |
318 |
gtactgatataatctgtgtgtcctttg |
344 |
Q |
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| T |
2489170 |
gtactgatataatctgtgtgtcctttg |
2489196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 41592303 - 41592228
Alignment:
| Q |
18 |
aagagattatcgtgtcagcaatttcgtatcatttaatgaagaacaaagagcctgaatacagaaatggaaaactgat |
93 |
Q |
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|||||||||| ||||||||||| || ||||||| ||||| |||||||| | |||||||||||||| || ||||| |
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| T |
41592303 |
aagagattattgtgtcagcaatctctcatcatttgatgaaaaacaaagacctcgaatacagaaatgggaagctgat |
41592228 |
T |
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