View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_high_11 (Length: 310)
Name: NF3735_high_11
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_high_11 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 21843819 - 21843894
Alignment:
| Q |
189 |
gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctctgtgatatcctgtt |
263 |
Q |
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| T |
21843819 |
gttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcctgtt |
21843894 |
T |
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Target: scaffold0125 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 20033 - 19966
Alignment:
| Q |
189 |
gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctctgtgat |
255 |
Q |
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| T |
20033 |
gttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgat |
19966 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 10660613 - 10660696
Alignment:
| Q |
200 |
tgttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctctgtgatatcctgtttgtggtgtttttgtgcttag |
283 |
Q |
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| T |
10660613 |
tgttgtgctattatgctatctgcatttagccggttctttttgtctggcaatgtgatgttatgttcatggtgtttttgtgcttag |
10660696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 10874758 - 10874841
Alignment:
| Q |
200 |
tgttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctctgtgatatcctgtttgtggtgtttttgtgcttag |
283 |
Q |
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| T |
10874758 |
tgttgtgctattatgctatctgcatttagccggttctttttgtctggcaatgtgatgttatgttcatggtgtttttgtgcttag |
10874841 |
T |
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