View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_high_13 (Length: 271)
Name: NF3735_high_13
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_high_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 438363 - 438615
Alignment:
| Q |
1 |
acgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctga |
100 |
Q |
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| T |
438363 |
acgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctga |
438462 |
T |
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| Q |
101 |
cgagtattgtgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtacagtctttagcttattattctcaaatctctttctgggcttgt |
200 |
Q |
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| T |
438463 |
cgagtattgtgaacacatgctagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttattattctcaaatctctttctgggcttgt |
438562 |
T |
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| Q |
201 |
atatggcattgatgacgggagcaaccactatagtcattagaagaactgcagag |
253 |
Q |
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| T |
438563 |
atatggcattgatgacaggagccaccactatagtcattagaagaactgcagag |
438615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28608541 - 28608293
Alignment:
| Q |
1 |
acgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctga |
100 |
Q |
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||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| | || ||| |
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| T |
28608541 |
acgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcttga |
28608442 |
T |
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| Q |
101 |
cgagtattgtgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtacagtctttagcttattattctcaaatctctttctgggcttgt |
200 |
Q |
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| T |
28608441 |
cgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctttttgggcttgt |
28608342 |
T |
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| Q |
201 |
atatggcattgatgacgggagcaaccactatagtcattagaagaactgc |
249 |
Q |
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| T |
28608341 |
atatgacatttatgatgggagctaccactatagtcattaaaataactgc |
28608293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 13659900 - 13659662
Alignment:
| Q |
13 |
ttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtattgtga |
112 |
Q |
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| T |
13659900 |
ttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgagcattatga |
13659801 |
T |
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| Q |
113 |
acacatgctagaatcctaagctctgcatcaagtctgagcttttgtacagtctttagcttattattctcaaatctctttctgggcttgtatatggcattga |
212 |
Q |
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| T |
13659800 |
acacatgtaagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctctttctcggcttatatatgacattga |
13659701 |
T |
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| Q |
213 |
tgacgggagcaaccactatagtcattagaagaactgcag |
251 |
Q |
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| T |
13659700 |
ttgtgggaggcaccactatagtcattaaaagtactgcag |
13659662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 13652400 - 13652174
Alignment:
| Q |
13 |
ttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtattgtga |
112 |
Q |
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| T |
13652400 |
ttcaataaggtaaagtgaaaaaacatgtataggggaaattctagtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtattgtga |
13652301 |
T |
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| Q |
113 |
acacatgctagaatcctaagctctgcatcaagtctgagcttttgtacagtctttagcttattattctcaaatctctttctgggcttgtatatggcattga |
212 |
Q |
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| T |
13652300 |
acacatgttagaatcctaagttctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctcttcctgggcttatatatcgcattaa |
13652201 |
T |
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| Q |
213 |
tgacgggagcaaccactatagtcatta |
239 |
Q |
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| T |
13652200 |
taacgagaggaaccacaatagtcatta |
13652174 |
T |
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