View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3735_high_16 (Length: 222)

Name: NF3735_high_16
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3735_high_16
NF3735_high_16
[»] chr7 (8 HSPs)
chr7 (82-222)||(42513062-42513202)
chr7 (82-222)||(30456317-30456456)
chr7 (92-204)||(11206499-11206611)
chr7 (82-222)||(30452712-30452847)
chr7 (93-222)||(49017137-49017266)
chr7 (81-222)||(41712304-41712443)
chr7 (92-206)||(6102928-6103043)
chr7 (158-222)||(38572287-38572351)
[»] chr3 (8 HSPs)
chr3 (82-211)||(36326511-36326640)
chr3 (92-178)||(14029381-14029467)
chr3 (143-221)||(30912066-30912144)
chr3 (129-218)||(33328218-33328306)
chr3 (131-222)||(55211737-55211824)
chr3 (82-121)||(30912146-30912185)
chr3 (96-138)||(32414847-32414889)
chr3 (151-212)||(32414760-32414821)
[»] chr6 (6 HSPs)
chr6 (80-222)||(4834729-4834871)
chr6 (82-210)||(7415661-7415789)
chr6 (82-210)||(7422669-7422797)
chr6 (82-210)||(7426608-7426736)
chr6 (82-222)||(33242858-33242998)
chr6 (82-184)||(13886589-13886691)
[»] chr5 (6 HSPs)
chr5 (81-222)||(8123538-8123679)
chr5 (81-209)||(41709523-41709651)
chr5 (92-222)||(671472-671602)
chr5 (82-222)||(24108707-24108848)
chr5 (8-55)||(4287571-4287618)
chr5 (82-162)||(10321869-10321949)
[»] chr1 (5 HSPs)
chr1 (82-218)||(23405475-23405611)
chr1 (82-219)||(18583886-18584023)
chr1 (82-172)||(21075941-21076031)
chr1 (92-172)||(9893803-9893883)
chr1 (92-209)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (82-218)||(44761981-44762117)
chr8 (82-218)||(44765288-44765424)
[»] chr4 (5 HSPs)
chr4 (82-216)||(27387636-27387770)
chr4 (82-214)||(55322334-55322467)
chr4 (82-218)||(36050678-36050813)
chr4 (82-218)||(36053937-36054072)
chr4 (92-206)||(24733642-24733756)
[»] chr2 (4 HSPs)
chr2 (82-186)||(31211859-31211963)
chr2 (98-218)||(45327420-45327540)
chr2 (92-165)||(31193244-31193317)
chr2 (82-119)||(40400909-40400946)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 42513062 - 42513202
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 42513161  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42513162 aataaagcatacaatgcttatatagacttgtgcatactcat 42513202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 30456456 - 30456317
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
     ||||  |||| ||||||||||||||||| |||||||||||    
T  30456356 cataaggcatataatgcttatatagactt-tgcatactcat 30456317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  92 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacat 191  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||    
T  11206611 caattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcat 11206512  T
Q  192 acaatgcttatat 204  Q
    |||||| ||||||    
T  11206511 acaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 30452847 - 30452712
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30452748  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
     ||||  |||||||    ||||||||||| |||||||||||    
T  30452747 cataaggcatacaa----tatatagactt-tgcatactcat 30452712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 49017266 - 49017137
Alignment:
Q  93 aattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacata 192  Q
    ||||||| |||||||||||||||| || | |||| ||||||||||||| || |||||||||||  |||||||| |||||| | |||||||||||  ||||    
T  49017266 aattcgaatagggatcacactccataaattagagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcata 49017167  T
Q  193 caatgcttatatagacttgtgcatactcat 222  Q
    ||||||||||| | ||||||| ||| ||||    
T  49017166 caatgcttatacaaacttgtggatagtcat 49017137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 41712443 - 41712304
Alignment:
Q  81 ttgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 179  Q
    |||||||||  ||||||||||| ||||||||||||| || || |||| || |||||||||| || |||||| |||||  |||| ||  ||||||||||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagaga-aaactagagacaaaagaaaggaaatttgttatttt--tcattcattctc 41712347  T
Q  180 ataataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||    
T  41712346 ataataagacatacaatacttatatagacttgtgcctactcat 41712304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 6103043 - 6102928
Alignment:
Q  92 caattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagag-aaagaaaattcattatattattcattcattctcataataaaac 189  Q
    ||||||||||||| ||||||||||| || || |||| || |||||||||| || || ||| ||||||||||||||| |||||| ||||| || || |||     
T  6103043 caattcgagtaggaatcacactccataaattaagagaga-aaactagagataaaagcaaaaaaaattcattatatttttcattgattctaatcatgaaag 6102945  T
Q  190 atacaatgcttatatag 206  Q
    |||||||||||||||||    
T  6102944 atacaatgcttatatag 6102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 38572287 - 38572351
Alignment:
Q  158 attatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    |||||||| || ||| |||||||||||||  ||||||||| ||||||||||||| ||||| ||||    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcat 38572351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 36326640 - 36326511
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 36326541  T
Q  182 aataaaacatacaatgcttatatagacttg 211  Q
    |||||| |||||||||||||||||||||||    
T  36326540 aataaagcatacaatgcttatatagacttg 36326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 14029467 - 14029381
Alignment:
Q  92 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattct 178  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  14029467 caattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 30912144 - 30912066
Alignment:
Q  143 agagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactca 221  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||| ||||||||||||||||||||||||    
T  30912144 agagaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactca 30912066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 33328306 - 33328218
Alignment:
Q  129 agaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatac 218  Q
    |||||||| |||||| |||||| ||||| |||||||  ||||||  |||| || ||||| ||||||||||||||| |||||| |||||||    
T  33328306 agaaacta-agaaaaaagaaaggaaattgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatac 33328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 55211737 - 55211824
Alignment:
Q  131 aaactagagaaaagagaaaga-aaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    |||||||||| |||||| | | |||||||||||||| |||||| |||||||||||||  |||||||     ||||||||||||||||| ||||    
T  55211737 aaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcat 55211824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 30912185 - 30912146
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaatt 121  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaatt 30912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 32414889 - 32414847
Alignment:
Q  96 tcgagtagggatcacactccagaattcagagggagaaactaga 138  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaactaga 32414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 32414821 - 32414760
Alignment:
Q  151 aaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgt 212  Q
    |||| |||||||||| || ||| |||||| ||||||  ||||||||| ||||||||||||||    
T  32414821 aaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgt 32414760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 4834871 - 4834729
Alignment:
Q  80 gttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 179  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  4834871 gttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  180 ataataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    ||||| |  |||||||||||||||||||||| |||||||||||    
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcat 4834729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 7415789 - 7415661
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||| ||| | |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7415690  T
Q  182 aataaaacatacaatgcttatatagactt 210  Q
    |||||  ||||||||||||||||||||||    
T  7415689 aataaggcatacaatgcttatatagactt 7415661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 7422797 - 7422669
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7422698  T
Q  182 aataaaacatacaatgcttatatagactt 210  Q
    |||||  ||||||||||||||||||||||    
T  7422697 aataaggcatacaatgcttatatagactt 7422669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 7426736 - 7426608
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctcat 7426637  T
Q  182 aataaaacatacaatgcttatatagactt 210  Q
    |||||  ||||||||| ||||||||||||    
T  7426636 aataaggcatacaatgtttatatagactt 7426608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 33242998 - 33242858
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||| ||||||||||||||| | |||| ||||||||||| | || |||||  |||||||||||||| |||||| ||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctcat 33242899  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    |||||  ||||||||||||||||||||||||||||||||||    
T  33242898 aataaggcatacaatgcttatatagacttgtgcatactcat 33242858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 13886592  T
Q  182 aat 184  Q
    |||    
T  13886591 aat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 8123679 - 8123538
Alignment:
Q  81 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    |||||||||  ||||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctca 8123580  T
Q  181 taataaaacatacaatgcttatatagacttgtgcatactcat 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  8123579 taataaagcatacaatgcttatatagacttgtgcatactcat 8123538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  81 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattctca 41709552  T
Q  181 taataaaacatacaatgcttatatagact 209  Q
    ||||||  ||||||||| |||||||||||    
T  41709551 taataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 671602 - 671472
Alignment:
Q  92 caattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 190  Q
    |||||||||| ||||||||||| ||||| | | || |||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||  ||    
T  671602 caattcgagttgggatcacacttcagaaatta-agagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  191 tacaatgcttatatagacttgtgcatactcat 222  Q
    ||||||| ||||||| ||||||||||||||||    
T  671503 tacaatgattatataaacttgtgcatactcat 671472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 24108848 - 24108707
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||| ||||| ||||||| ||   |||| |||||||||||||| ||||||  |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta-aggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  181 taataaaacatacaatgcttatatagacttg-tgcatactcat 222  Q
    | |||| |||||||||||||||||||||||| |||||||||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcat 24108707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 4287618 - 4287571
Alignment:
Q  8 cagcacagagagatgacaaaacagaagaatatagttttagggagcaag 55  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4287618 cagcacagagagatgacaaaacagaagaatttagttttagggagcaag 4287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattat 162  Q
    ||||||||  ||||| ||||||||||||||||||| |||| |||| || || ||||||| ||||||||| |||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 23405475 - 23405611
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 23405574  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatac 218  Q
    |||||  ||||||||| ||| ||||||||||||||||    
T  23405575 aataaggcatacaatgtttagatagacttgtgcatac 23405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 18583886 - 18584023
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    ||||||||  |||||||||||| ||| ||||||||||| || |||| || |||||||||| || |||||| ||||||| |||||| |||||| |||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagaga-aaactagagataaaagaaaggaaattcagtatatttttcattgattctca 18583984  T
Q  181 taataaaacatacaatgcttatatagacttgtgcatact 219  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatact 18584023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 21075941 - 21076031
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 172  Q
    |||||||||  ||||||||||||||| ||||||||||||| || | ||||||||| ||| || |||||| ||||||| |||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcatt 21076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 9893883 - 9893803
Alignment:
Q  92 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 172  Q
    ||||| ||||||| |||||||| || |||| || |  ||||||||||||  | ||||||||||||||||||||| ||||||    
T  9893883 caatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaagaaaattcattatatttttcatt 9893803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 13087817 - 13087701
Alignment:
Q  92 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattatt-cattcattctcataataaaaca 190  Q
    |||||||| |||| ||||||||||||||||  ||| |||    || ||| || |||||  ||||||||| |||| || ||||||||||||||||||  ||    
T  13087817 caattcgaataggtatcacactccagaatttcgagagaggt--taaagataaaagaaaataaattcattgtattttttcattcattctcataataaggca 13087720  T
Q  191 tacaatgcttatatagact 209  Q
    |||||| ||||||||||||    
T  13087719 tacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 44762117 - 44761981
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttcat 44762018  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatac 218  Q
    |||||  ||||||||| ||||||||||||||||||||    
T  44762017 aataaggcatacaatgtttatatagacttgtgcatac 44761981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 44765424 - 44765288
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttcat 44765325  T
Q  182 aataaaacatacaatgcttatatagacttgtgcatac 218  Q
    |||||   |||||||| ||||||||||||||||||||    
T  44765324 aataaggaatacaatgtttatatagacttgtgcatac 44765288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 27387770 - 27387636
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 181  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||  |||||||||||||| ||||||| | || ||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaat 27387671  T
Q  182 aataaaacatacaatgcttatatagacttgtgcat 216  Q
    ||| |  ||||||||||||||||||||||||||||    
T  27387670 aatgaggcatacaatgcttatatagacttgtgcat 27387636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 55322334 - 55322467
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcatta-tattattcattcattctca 180  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||||||| |||| ||||||||| || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  181 taataaaacatacaatgcttatatagacttgtgc 214  Q
    |||| |  ||||||||||||||||||||||||||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgc 55322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 36050813 - 36050678
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  181 taataaaacatacaatgcttatatagacttgtgcatac 218  Q
    ||||||  ||||||||| ||||||||||||||||||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatac 36050678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 36054072 - 36053937
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  181 taataaaacatacaatgcttatatagacttgtgcatac 218  Q
    ||||||  ||||||||| ||||||||||||||||||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatac 36053937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 24733756 - 24733642
Alignment:
Q  92 caattcgagtagggatcacactccaga-attcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 190  Q
    |||||| |||||||||||||||  ||| ||| |||| || |||||||| | || |||||| |||||||||||||| ||||||| |||| || || |||||    
T  24733756 caattcaagtagggatcacactttagatattaagagaga-aaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaaca 24733658  T
Q  191 tacaatgcttatatag 206  Q
    ||||||||||||||||    
T  24733657 tacaatgcttatatag 24733642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 31211963 - 31211859
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 180  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || |||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattctca 31211865  T
Q  181 taataa 186  Q
    ||||||    
T  31211864 taataa 31211859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 45327420 - 45327540
Alignment:
Q  98 gagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaat 196  Q
    |||||||||||||||||||||| || |||| || ||| |||||| || |||||  ||||| |||||||| ||||||  |||||||||||| |||||||||    
T  45327420 gagtagggatcacactccagaaattaagagaga-aaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaat 45327518  T
Q  197 gcttatatagacttgtgcatac 218  Q
    ||||||||||||||||||||||    
T  45327519 gcttatatagacttgtgcatac 45327540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 31193317 - 31193244
Alignment:
Q  92 caattcgagtagggatcacactccag-aattcagagggagaaactagagaaaagagaaagaaaattcattatatt 165  Q
    ||||||||||||||||||||||| || |||| |||| || ||||||||||  | |||||||||||| ||||||||    
T  31193317 caattcgagtagggatcacactctagaaattaagagaga-aaactagagatgaaagaaagaaaatttattatatt 31193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 40400909 - 40400946
Alignment:
Q  82 tgatacgattcaattcgagtagggatcacactccagaa 119  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaa 40400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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