View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_high_2 (Length: 486)
Name: NF3735_high_2
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 49298035 - 49298488
Alignment:
| Q |
19 |
ccaaatgttccttctagatgacacctagtgttccggcctttcttcattaacaaatctggaaacaaaagatatgagtttgttttattaaagaagctaaaac |
118 |
Q |
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| T |
49298035 |
ccaaatgttccttctagatgacacctagtgttccggcctttcttcattaacaaatcaggaaacaaaagatatgagtgtgttttattaaagaagctaaaac |
49298134 |
T |
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| Q |
119 |
ttaaaagtaataattaagnnnnnnnn-taatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaa |
217 |
Q |
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| T |
49298135 |
ttaaaagtaataattaagaaaaaaaaataatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaa |
49298234 |
T |
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| Q |
218 |
acttccctgttttgggcgggaaatcaagttaatacctttttcgtttttgatcatgatcctcacgcggttaagagagtcatttcaataacattattcacag |
317 |
Q |
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| T |
49298235 |
acttccctgttttgggcgggaaatcaagttaatacctttttcgttttcgatcatgatcctcacgcggttaagagagtcatttcaattac---attcacag |
49298331 |
T |
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| Q |
318 |
ggtcaaaatagtcattagagtttacactcgttcaaatattgacgacannnnnnnnnnnnnacatatacaatgatatcggtaacaaaaaagtttctaaaca |
417 |
Q |
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| T |
49298332 |
ggtcaaaatagtcattagagtttacactcgttcaaatattgacgac---ggtgcccccctccatatacaatgat-tcgataacaaaaaagtttctaaaca |
49298427 |
T |
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| Q |
418 |
gaaagatatgatcacatctatatctccatcactataccatagctcacattcacttcatctc |
478 |
Q |
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| T |
49298428 |
gaaagatatgataacatctatatctccatcactataccatagctcatattcacttcatctc |
49298488 |
T |
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