View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3735_high_3 (Length: 476)

Name: NF3735_high_3
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3735_high_3
NF3735_high_3
[»] chr5 (3 HSPs)
chr5 (144-457)||(4287253-4287567)
chr5 (1-102)||(8123455-8123556)
chr5 (4-102)||(671389-671487)
[»] chr7 (5 HSPs)
chr7 (1-102)||(42513184-42513285)
chr7 (1-102)||(38572333-38572434)
chr7 (246-330)||(19990230-19990314)
chr7 (1-58)||(41712265-41712322)
chr7 (108-141)||(38572462-38572495)
[»] chr3 (6 HSPs)
chr3 (1-102)||(30911982-30912083)
chr3 (9-79)||(36326442-36326512)
chr3 (1-100)||(55211806-55211905)
chr3 (6-102)||(32414663-32414759)
chr3 (108-141)||(30911921-30911954)
chr3 (107-143)||(55211934-55211970)
[»] chr6 (6 HSPs)
chr6 (1-102)||(4834644-4834747)
chr6 (13-102)||(7415566-7415655)
chr6 (1-102)||(33242776-33242876)
chr6 (13-99)||(7426516-7426602)
chr6 (13-86)||(7422590-7422663)
chr6 (32-102)||(13886515-13886585)
[»] chr1 (2 HSPs)
chr1 (1-102)||(18584008-18584109)
chr1 (39-102)||(13087634-13087696)
[»] chr2 (1 HSPs)
chr2 (1-102)||(31211616-31211717)
[»] chr4 (3 HSPs)
chr4 (2-102)||(20441042-20441141)
chr4 (106-141)||(36050519-36050554)
chr4 (106-141)||(36053778-36053813)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 144 - 457
Target Start/End: Complemental strand, 4287567 - 4287253
Alignment:
Q  144 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4287567 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatc 4287468  T
Q  244 gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287467 gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct 4287368  T
Q  344 tgcgtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattac-aaattgc 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4287367 tgcgtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattacaaaattgc 4287268  T
Q  443 aattcatattaaggg 457  Q
    |||||||||||||||    
T  4287267 aattcatattaaggg 4287253  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8123556 - 8123455
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | | |||||||||||||||||| |||||| ||||    
T  8123556 tagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatcttctagatccttctagattaaggtcagtc 8123457  T
Q  101 at 102  Q
    ||    
T  8123456 at 8123455  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 671487 - 671389
Alignment:
Q  4 acttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 102  Q
    ||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||| ||| | |||||||||||| |||||||||||||    
T  671487 acttgtgcatactcataataagataagtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctagattaaggtgagtcat 671389  T

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Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42513184 - 42513285
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||    
T  42513184 tagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctagatccttctagattaaggtgagtc 42513283  T
Q  101 at 102  Q
    ||    
T  42513284 at 42513285  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 38572333 - 38572434
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||| ||||| ||||||||| ||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  38572333 tagacttgggcatattcataataagataagtgtaccctaacttactcaatattatcccctaacaagataccttctagatccttttagattaaggtgagtc 38572432  T
Q  101 at 102  Q
    ||    
T  38572433 at 38572434  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 19990314 - 19990230
Alignment:
Q  246 taaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgat 330  Q
    ||||||||| ||||||||||||||||||||||| ||||||  |||||||||| ||| ||| |||||||||| ||| |||||||||    
T  19990314 taaacatattgatttgagatttcattttcttagtgacctcattaaagatggaatgattgatctagttcattacaaaacaaatgat 19990230  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41712322 - 41712265
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatccc 58  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||    
T  41712322 tagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatccc 41712265  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
Q  108 cacattagtactcattattctaaatatcctatca 141  Q
    ||||||||||||||||||||||||||| ||||||    
T  38572462 cacattagtactcattattctaaatatactatca 38572495  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30912083 - 30911982
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||  || |||||||||||||| |||||||||||    
T  30912083 tagacttgtgcatactcacaataaaataagtgcaccctaacatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtc 30911984  T
Q  101 at 102  Q
    ||    
T  30911983 at 30911982  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36326512 - 36326442
Alignment:
Q  9 tgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagat 79  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36326512 tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagataccttctagat 36326442  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 55211806 - 55211905
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||| ||| ||||||| | ||||||| |||| |||| ||||||    
T  55211806 tagacttgtgcatattcataataagataagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtc 55211905  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 32414759 - 32414663
Alignment:
Q  6 ttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 102  Q
    ||||||| ||||| ||||| |||||||||||  |||||||| ||||| ||||||  |||| ||||||||||||||||| |||  |||||||||||||    
T  32414759 ttgtgcaaactcaaaataagataagtgcaccataacatacttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcat 32414663  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
Q  108 cacattagtactcattattctaaatatcctatca 141  Q
    ||||||||||||||||||||||| ||||||||||    
T  30911954 cacattagtactcattattctaagtatcctatca 30911921  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 55211934 - 55211970
Alignment:
Q  107 ccacattagtactcattattctaaatatcctatcagt 143  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  55211934 ccacattagtgctccttattctaaatatcctatcagt 55211970  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4834747 - 4834644
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagata--ccttctagatccttctagactaaggtgag 98  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||  |||| |||||||||||||| |||||||||    
T  4834747 tagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttttagatccttctagattaaggtgag 4834648  T
Q  99 tcat 102  Q
    ||||    
T  4834647 tcat 4834644  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 7415655 - 7415566
Alignment:
Q  13 tactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 102  Q
    |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||  ||||||||||||||| | |||| ||||||||    
T  7415655 tactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctagatccttctaaattaagatgagtcat 7415566  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 33242876 - 33242776
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||| ||  |||||| |||||| ||||||||| ||| ||    
T  33242876 tagacttgtgcatactcataataagataagtgcacct-aacatactcaatattatcccctaacaatatgtcttctaaatccttatagactaagatgactc 33242778  T
Q  101 at 102  Q
    ||    
T  33242777 at 33242776  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7426602 - 7426516
Alignment:
Q  13 tactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagt 99  Q
    ||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| |||||    
T  7426602 tactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctagatcctactagattaagatgagt 7426516  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 7422663 - 7422590
Alignment:
Q  13 tactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttcta 86  Q
    ||||| |||||| |||||||||||  |||||||||||| | |||||||||||||||| ||||||||||||||||    
T  7422663 tactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctagatccttcta 7422590  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 13886585 - 13886515
Alignment:
Q  32 gcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 102  Q
    |||||| |||||||| ||||| | ||| |||||| ||||||| |||||| ||||||| |||||||||||||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcat 13886515  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18584008 - 18584109
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    |||||||||||||||| ||||||  |||| ||||||| |||||||||||||| ||||||||| || ||||||| |||||||||||||| |||||||||||    
T  18584008 tagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttagatccttctagattaaggtgagtc 18584107  T
Q  101 at 102  Q
    ||    
T  18584108 at 18584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 13087696 - 13087634
Alignment:
Q  39 aacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 102  Q
    ||||||||| |||| |||||||||||| ||||||||||||| | |||||| |||||||||||||    
T  13087696 aacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcat 13087634  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31211717 - 31211616
Alignment:
Q  1 tagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 100  Q
    ||||||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||| ||| |||||| ||||||||||| ||| |||||||    
T  31211717 tagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttctagattaaagtgagtc 31211618  T
Q  101 at 102  Q
    ||    
T  31211617 at 31211616  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 20441042 - 20441141
Alignment:
Q  2 agacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtca 101  Q
    ||||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||| |||||| |||| || ||||| |||||| | ||||||||||||    
T  20441042 agacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaattaaggtgagtca 20441140  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
Q  106 accacattagtactcattattctaaatatcctatca 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050554 accacattagtactcattattctaaatatcctatca 36050519  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
Q  106 accacattagtactcattattctaaatatcctatca 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053813 accacattagtactcattattctaaatatcctatca 36053778  T

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