View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_high_9 (Length: 323)
Name: NF3735_high_9
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 42748407 - 42748095
Alignment:
| Q |
1 |
tcttaatagttgttggaacttctatatagaagtatatatagtacattcaaattaaataaataatcttcatagttgttggagcttctatatagtacattca |
100 |
Q |
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| T |
42748407 |
tcttaatagttgttggaacttctatatagaagtatatatagtacattcaaattaaataaataatcttcatagttgttggagcttctatatagtacattca |
42748308 |
T |
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| Q |
101 |
aattaaacaattttaatagttggagctttctaagaggcttagtccttagttacttgcaatagaaaggtaccagcccactagttataaaattcacatgtta |
200 |
Q |
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| T |
42748307 |
aattaaacaattttaatagttggagctttctaagaggcttagtccttagttacttgcaatagaaaggtaccagcccactagttataaaattcacatgtta |
42748208 |
T |
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| Q |
201 |
tgtcatcaatgctacggtatttgaggcttgtgagagtgattttcaagttaaaccaaagttgtcacttgcttaaaatacttgccatgagtacttttaatat |
300 |
Q |
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| T |
42748207 |
tgtcatcaatgctacggtatttgaggcttgtgagagtgattttcaagttaaaccaaagttgtcacttgcttaaaatacttgctatgagtacttttaatat |
42748108 |
T |
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| Q |
301 |
ccatttccctatg |
313 |
Q |
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| T |
42748107 |
ccatttccctatg |
42748095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 42748434 - 42748379
Alignment:
| Q |
37 |
tatagtacattcaaattaaataaataatcttcatagttgttggagcttctatatag |
92 |
Q |
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| T |
42748434 |
tatagtactttcaaattaaataaactatcttaatagttgttggaacttctatatag |
42748379 |
T |
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