View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_low_1 (Length: 536)
Name: NF3735_low_1
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Complemental strand, 5044087 - 5043582
Alignment:
| Q |
10 |
acatcatcaattgaatcaagctcttcaattatcaacttgagatccattttttcagtgtctaagacactagaaaaacaacctttgaaagatgtttcaaaac |
109 |
Q |
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| T |
5044087 |
acatcatcaattgaatcaagctcttcaattatcaacttgagatccattttttcagtgtctaagacactagaaaaacaacctttgaaagatgtttcaaaac |
5043988 |
T |
|
| Q |
110 |
ccatcaatggattatcaatctcatatgaaagcattgttgaataccctctaaaaaatgaatgtttannnnnnnggtttgatgaattgaagagtgtgtagaa |
209 |
Q |
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| T |
5043987 |
ccatcaatggattatccatctcatacgaaagcattgttgaataccctctaaaaaatgaatgttt--ttttttggtttgatgaattgaagagtgtgcagaa |
5043890 |
T |
|
| Q |
210 |
agtgtggaaggataagaagcgtgtgggaaagaaaaggaaggttgaatgaaaatgctgtcaaagggacaaagtttattgcttttgcnnnnnnncccacttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5043889 |
agtgtggaaggataagaagcgtgtgggaaagaaaaggaaggttgaatgaaaatgctgtcaaagggacaaagtttattgcttttgctttttttcccacttt |
5043790 |
T |
|
| Q |
310 |
ttctatggtcaaaattcaaaaaagtataaccttgcttatttcatcatctttgatatgattgagtcttcactaacaccaaagcattcttcctcttcaagct |
409 |
Q |
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| T |
5043789 |
ttctatggtcaaaattcaaaaaagtataaccttgcttatttcatcatctttgatatgattgagtcttcactaacaccaaagcattcttcctcttcaagct |
5043690 |
T |
|
| Q |
410 |
ccacaaaaagtaagatatcatcaaacaagattacccacatgaacaaactagcatnnnnnnngtttcattttcatgaatgaagagcaacaaaatgatgtat |
509 |
Q |
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| T |
5043689 |
ccacaaaaagtaagatatcatcaaacaagattacccacatgaacaaactagcataaaaaaagtttcattttcatgaatgaagagcaacaaaatgatgtat |
5043590 |
T |
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| Q |
510 |
gagagacc |
517 |
Q |
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| T |
5043589 |
gagagacc |
5043582 |
T |
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