View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_low_17 (Length: 230)
Name: NF3735_low_17
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_17 |
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| [»] scaffold1084 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 2899503 - 2899305
Alignment:
| Q |
14 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaatatgtgcctttgaataaagtgtgttcaagaattc |
113 |
Q |
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| T |
2899503 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaatatgttcctttgaataaagtgtgttcaagaattt |
2899404 |
T |
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| Q |
114 |
cttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccatcgtgcctctggtgtgtccaccagaagggatttt |
212 |
Q |
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| T |
2899403 |
gttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccatcatgcctctggtgtgtccaccagaagggatttt |
2899305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 44779388 - 44779520
Alignment:
| Q |
80 |
tatgtgcctttgaataaagtgtgttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
179 |
Q |
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| T |
44779388 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcccccaagggcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
44779487 |
T |
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| Q |
180 |
cgtgcctctggtgtgtccaccagaagggatttt |
212 |
Q |
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| T |
44779488 |
cgtgcctctggtgtgtccaccagaagggatttt |
44779520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 39876158 - 39876288
Alignment:
| Q |
80 |
tatgtgcctttgaataaagtgtgttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
179 |
Q |
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| T |
39876158 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacatcagttcggtaattattcaaattccacaacttcccat |
39876257 |
T |
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| Q |
180 |
cgtgcctctggtgtgtccaccagaagggatt |
210 |
Q |
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| T |
39876258 |
cgtgcctctggtgtgtcccccagaaaggatt |
39876288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 44778486 - 44778551
Alignment:
| Q |
14 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaa |
79 |
Q |
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| T |
44778486 |
ttatacttcatagattcctcaaaacctgatgccttttcccagaagagaccctcccaagttggaaaa |
44778551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 39875338 - 39875403
Alignment:
| Q |
14 |
ttatacttcatagattcctcaaaacctgatgctttttcccagaagagaccttcccaagttggaaaa |
79 |
Q |
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| T |
39875338 |
ttatacttcatagattcctcgaaacctgatgccttttcccagaatagaccttcccaagttggaaaa |
39875403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 2717 - 2656
Alignment:
| Q |
103 |
ttcaagaattccttcaattcctccaagagcttgaataacatcagttcggtaattattcaagt |
164 |
Q |
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| T |
2717 |
ttcaagaattccttcaacacctccaagggcttgaataacatcagttctgtaattgttcaagt |
2656 |
T |
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