View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3735_low_21 (Length: 206)

Name: NF3735_low_21
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3735_low_21
NF3735_low_21
[»] chr1 (9 HSPs)
chr1 (14-156)||(46358522-46358664)
chr1 (18-149)||(15373957-15374089)
chr1 (14-149)||(4530821-4530957)
chr1 (49-150)||(15374646-15374746)
chr1 (49-141)||(46357885-46357976)
chr1 (48-150)||(45597623-45597725)
chr1 (100-150)||(51610220-51610270)
chr1 (109-149)||(3788435-3788475)
chr1 (106-150)||(4626345-4626389)
[»] chr3 (8 HSPs)
chr3 (14-148)||(51492370-51492504)
chr3 (14-150)||(42146799-42146934)
chr3 (14-116)||(44385142-44385245)
chr3 (49-149)||(42147497-42147596)
chr3 (50-149)||(51491709-51491807)
chr3 (101-150)||(46580363-46580412)
chr3 (48-149)||(53714487-53714588)
chr3 (109-149)||(50306531-50306571)
[»] chr7 (6 HSPs)
chr7 (16-149)||(9379710-9379843)
chr7 (14-150)||(37693472-37693609)
chr7 (15-150)||(36661684-36661819)
chr7 (95-150)||(9378728-9378783)
chr7 (24-83)||(30915799-30915858)
chr7 (35-83)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (18-135)||(67907-68024)
scaffold0016 (49-149)||(67247-67346)
[»] chr2 (3 HSPs)
chr2 (14-149)||(6198816-6198951)
chr2 (34-149)||(5504344-5504458)
chr2 (109-149)||(26021919-26021959)
[»] chr8 (3 HSPs)
chr8 (14-149)||(511355-511491)
chr8 (155-190)||(44458876-44458911)
chr8 (155-190)||(44466409-44466444)
[»] chr4 (5 HSPs)
chr4 (24-150)||(5825333-5825457)
chr4 (24-84)||(20350402-20350462)
chr4 (99-150)||(55879793-55879844)
chr4 (96-150)||(49708720-49708774)
chr4 (31-75)||(6680273-6680317)
[»] chr5 (1 HSPs)
chr5 (109-149)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 46358522 - 46358664
Alignment:
Q  14 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggt 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  46358522 agggtgtgggagatagtgtgaaaaaatttagtggtgagagactatgataaaactatgctcttcatttgattaaaggattagaaatcaactttcccatggt 46358621  T
Q  114 gggaaaatatttccccatcccaccctaaatgccacctccgtag 156  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  46358622 gggaaaatcttttcccatcccaccctaaatgccacctccgtag 46358664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 15374089 - 15373957
Alignment:
Q  18 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaactttt-ccatggtggg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  15374089 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaacttttcccatggtggg 15373990  T
Q  117 aaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||| |||||||||||||||||||||||||||    
T  15373989 aaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 4530821 - 4530957
Alignment:
Q  14 agggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatgg 112  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||  |||  ||| ||||||||||| |||| |    
T  4530821 agggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatttgatctaagagttataaatcaactttcccattg 4530920  T
Q  113 tgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    |||| || | ||||||   |||||||||||| |||||    
T  4530921 tggggaattctttccctcacccaccctaaataccacc 4530957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 15374646 - 15374746
Alignment:
Q  49 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 148  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  15374646 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 15374744  T
Q  149 ct 150  Q
    ||    
T  15374745 ct 15374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 46357976 - 46357885
Alignment:
Q  49 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 141  Q
    ||||||||||||||||| | || |||| |||| || ||| || || ||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  46357976 gagagactatgataaaagtgtgttctttatttaatccaatgacta-aaatcaacttgcccatggtggaaaaatatttccccttcccaccctaa 46357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 45597725 - 45597623
Alignment:
Q  48 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 147  Q
    |||||||||||||||| |||||| ||||  |||||| |||  |||| |||  | |||| | ||||||||||| | ||||||   ||||||||||||||||    
T  45597725 tgagagactatgataatactatggtctttctttgatccaaccattaaaaagtatctttcctatggtgggaaattctttccctcacccaccctaaatgcca 45597626  T
Q  148 cct 150  Q
    |||    
T  45597625 cct 45597623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 51610220 - 51610270
Alignment:
Q  100 aacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacct 51610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 3788475 - 3788435
Alignment:
Q  109 atggtgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  3788475 atggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 4626345 - 4626389
Alignment:
Q  106 tccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    |||||||||||||| | ||||||  ||||||||||||||||||||    
T  4626345 tccatggtgggaaattttttccctctcccaccctaaatgccacct 4626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 51492370 - 51492504
Alignment:
Q  14 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  51492370 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggt 51492469  T
Q  114 gggaaaatatttccccatcccaccctaaatgccac 148  Q
    |||||||| |||| |||||||||||||||||||||    
T  51492470 gggaaaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 42146934 - 42146799
Alignment:
Q  14 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  42146934 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggt 42146835  T
Q  114 gggaaaatatttccccatcccaccctaaatgccacct 150  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  42146834 gggaaaatcttt-cccatcccaccctaaatgccacct 42146799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 44385142 - 44385245
Alignment:
Q  14 agggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatgg 112  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||||||||||| |||| |    
T  44385142 agggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataaatcaactttcccattg 44385241  T
Q  113 tggg 116  Q
    ||||    
T  44385242 tggg 44385245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 42147497 - 42147596
Alignment:
Q  49 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 148  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  42147497 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 42147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 51491807 - 51491709
Alignment:
Q  50 agagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    |||||||||||||||| | || |||| |||| || ||| |  || |||||||||| |||||||||| ||||| ||||||| ||||||||||||| |||||    
T  51491807 agagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgtccatggtggaaaaatctttccccttcccaccctaaataccacc 51491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 46580412 - 46580363
Alignment:
Q  101 acttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    ||||||||||||| ||||||| |||| ||  |||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacct 46580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 53714588 - 53714487
Alignment:
Q  48 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 147  Q
    |||||||||||||||| |||||| ||||  |||||| |||   ||| |||  | |||| ||||||||||||| | ||||||   ||||||||||||||||    
T  53714588 tgagagactatgataatactatggtctttctttgatccaaccgttaaaaagtatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 53714489  T
Q  148 cc 149  Q
    ||    
T  53714488 cc 53714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 50306531 - 50306571
Alignment:
Q  109 atggtgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  50306531 atggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 9379710 - 9379843
Alignment:
Q  16 ggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  9379710 ggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccatagtgg 9379809  T
Q  116 gaaaatatttccccatcccaccctaaatgccacc 149  Q
     ||||| |||||||||||||||||||||||||||    
T  9379810 aaaaatctttccccatcccaccctaaatgccacc 9379843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 37693472 - 37693609
Alignment:
Q  14 agggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatgg 112  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||||||||||| |||| |    
T  37693472 agggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataaatcaactttcccattg 37693571  T
Q  113 tgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    |||| || | ||||||   |||||||||||| ||||||    
T  37693572 tggggaattctttccctcacccaccctaaataccacct 37693609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 36661819 - 36661684
Alignment:
Q  15 gggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtg 114  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| |||||  || | | | |||   ||||| ||||||||    
T  36661819 gggtgtggaagatagtgtgaaaaaatctaatggtgagagtctataataaaattatgctcttcaattgatctaatggtcacaaaaatactttcccatggtg 36661720  T
Q  115 ggaaaatatttccccatcccaccctaaatgccacct 150  Q
    ||||| | ||||||   |||||||||||||||||||    
T  36661719 ggaaattctttccctcacccaccctaaatgccacct 36661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 9378783 - 9378728
Alignment:
Q  95 aaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9378783 aaatcaactttcccatggtggaaaaatctttccccttcccaccctaaatgccacct 9378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 30915858 - 30915799
Alignment:
Q  24 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 83  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30915858 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 30402788 - 30402836
Alignment:
Q  35 aaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 83  Q
    |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30402788 aaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30402836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 67907 - 68024
Alignment:
Q  18 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtggga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  67907 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccaaggtggga 68006  T
Q  118 aaatatttccccatccca 135  Q
    |||| |||||||||||||    
T  68007 aaatctttccccatccca 68024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 67346 - 67247
Alignment:
Q  49 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 148  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  67346 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 67248  T

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Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 6198816 - 6198951
Alignment:
Q  14 agggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggt 113  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||| ||| | ||| ||||||||||| | ||| |    
T  6198816 agggtgtgggagatagtgtaaaaaaatctagtggtgagagcctataataaaattatgctctttatttgatccaaaggttataaatcaactttcctatgat 6198915  T
Q  114 gggaaaatatttccccatcccaccctaaatgccacc 149  Q
    |||||| | ||||||   ||||||||||||||||||    
T  6198916 gggaaattctttccctcacccaccctaaatgccacc 6198951  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 5504458 - 5504344
Alignment:
Q  34 aaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcc 133  Q
    ||||||||||||| ||| |  |||| |||||| |||| | ||||||||||  || | | | |||||| |||||| || |||||||| | ||||||| |||    
T  5504458 aaaaaatctagtgttgaaaatctattataaaattatgttattcatttgatctaatggtcaaaaatca-cttttctatagtgggaaactctttccccttcc 5504360  T
Q  134 caccctaaatgccacc 149  Q
    ||||||||||||||||    
T  5504359 caccctaaatgccacc 5504344  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 26021919 - 26021959
Alignment:
Q  109 atggtgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  26021919 atggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 511355 - 511491
Alignment:
Q  14 agggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatgg 112  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||| | ||| ||||||||||| | |||     
T  511355 agggtgtgggagatagtgtgaaaaaaatctagtggtgagagcctataataaaattatgctcttcatttgatccaaaggttataaatcaactttcctatga 511454  T
Q  113 tgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||||| | |||||    ||||||||||||||||||    
T  511455 tgggaaattctttccttcacccaccctaaatgccacc 511491  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 44458876 - 44458911
Alignment:
Q  155 agcgaactgatcaagtactactaaagtggtgatagt 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  44458876 agcgaactgatcaagtactactaaagtggtgatagt 44458911  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 44466409 - 44466444
Alignment:
Q  155 agcgaactgatcaagtactactaaagtggtgatagt 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  44466409 agcgaactgatcaagtactactaaagtggtgatagt 44466444  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 5825457 - 5825333
Alignment:
Q  24 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatat 123  Q
    ||||||||| ||||||||||||| ||||||| || ||||| | | || || |||||||||  || | |||||||  |||||| | ||||||||||| | |    
T  5825457 agatagtgt-aaaaaatctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaa-aactttgctatggtgggaaactct 5825360  T
Q  124 ttccccatcccaccctaaatgccacct 150  Q
    |||||  ||||||||||||||||||||    
T  5825359 ttcccattcccaccctaaatgccacct 5825333  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 20350462 - 20350402
Alignment:
Q  24 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatt 84  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| |||||||||||||    
T  20350462 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatgatcttcatttgatt 20350402  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 55879844 - 55879793
Alignment:
Q  99 caacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    ||||||| ||||||||||||| ||||||||   |||||||||||||||||||    
T  55879844 caactttcccatggtgggaaattatttccctcacccaccctaaatgccacct 55879793  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 49708720 - 49708774
Alignment:
Q  96 aatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 150  Q
    |||| ||||||||||||||||||| | ||||||   |||||||||||||||||||    
T  49708720 aatctacttttccatggtgggaaattctttccctcacccaccctaaatgccacct 49708774  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 6680273 - 6680317
Alignment:
Q  31 gtgaaaaaatctagtggtgagagactatgataaaactatgctctt 75  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||    
T  6680273 gtgaaaaaatctagtgttgagaatctatgataaaactatgttctt 6680317  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  109 atggtgggaaaatatttccccatcccaccctaaatgccacc 149  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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