View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3735_low_5 (Length: 439)
Name: NF3735_low_5
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 27398995 - 27398775
Alignment:
| Q |
8 |
catcatcatgattgacaggagaggctgaggcaccttccctcaacctccccaacctaaggttgatttg-tttttagactaaaacaatgggttttacggtta |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27398995 |
catcatcatgattgacaggagagactgaggcaccttccctcaacctccccaacctaaggttgatttgctttttagactaaaacaatgggttttacggtta |
27398896 |
T |
|
| Q |
107 |
agccaaattccattttttaattaaaaaagcctaaacatgagtgcgtgagtctataaatcattca-------tatattcattacaccctctagtcttaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
|
|
| T |
27398895 |
agccaaattccattttttaattaaaaaagcctaaaca----tgcgtgagtctataaatcattcattgttcctatattcattacaccctttagtcttatat |
27398800 |
T |
|
| Q |
200 |
ataag-aaaaatatatatatacatg |
223 |
Q |
| |
|
||||| |||||| |||||||||||| |
|
|
| T |
27398799 |
ataagcaaaaatgtatatatacatg |
27398775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 237 - 424
Target Start/End: Complemental strand, 27398553 - 27398366
Alignment:
| Q |
237 |
tatttaagaccggaggaattacatggcaaggtgacatttgagtgacatatagttgaatttatgataacttggttaagaattgaggctatcc-ttttatag |
335 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
27398553 |
tatttaagaccggaggaattacatgccaacgtgacatttgattcccatatagttgaatttatgataacttggttaagaattgaggttatcctttttatag |
27398454 |
T |
|
| Q |
336 |
ctgtactgattttccatttgaacaattaatgcgaatgtcatactagaaaagaaccaaccgaccaatcattttgctgaatgtgacctctc |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27398453 |
ctgtactgattttccatttg-acaattaatgcgaatgtcatactagaaaagaaccaaccgaccaatcattttgttgaatgtgacctctc |
27398366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University